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Unigene SGN-U281034

Unigene Basic Information

Unigene ID:	SGN-U281034
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	281034
mRNA sequence:	Length: 465 bp

>SGN-U281034 Solanum tuberosum #4 (3 members)
CCAATTTGTCCACATTCTCTCTCGTTTAGGCCTGTCATACTTCCAGATTCTGCAAAACTGGAACTAAAGATACCAGAGGATGCACGTAGC
AATGCTTGGGTTTCTTTTGATGGGAAGAGAAGGCAACAACTCTCTAGAGGAGATTCTGTTCGCATATATATGAGCGAGCATCCACTACCT
ACAGTTAACAAATCTGATCAGACAGGCGATTGGTTTCATAGCTTGGTTCGTTGTCTAAATTGGAACGATAGACTAGAGCAGAAAGCACTC
TGAGACTATCAAAGATTAATCCTCCTCTCGTTCATGTAAATTAGTGTACAGTCATACATGTAAGAGAAAAATAACTAATATACTAAGAGT
CTATACGGTTATATTTTACTCTGCATCTGGCTGTGATTTATGCAGTTGGGTTATACCTTATTTTTCAAAGTAAGAAATTTGTACAGTGCT
ATTTTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	2

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|224066797\|ref\|XP_002302220.1\|	182	8e-45	94.44	270 bp (58.1%)	2
Description:	predicted protein [Populus trichocarpa] >gi222843946\|gb\|EEE81493.1\| predicted protein [Populus …
arabidopsis	blastx	At1G21640.1	182	6e-47	93.33	270 bp (58.1%)	2
Description:	Symbols: ATNADK-2, NADK2 \| NADK2 (NAD kinase 2); NAD+ kinase/ calmodulin binding \| chr1:758871…
swissprot	blastx	Q9C5W3	182	6e-46	93.33	270 bp (58.1%)	2
Description:	NAD kinase 2, chloroplastic OS=Arabidopsis thaliana GN=NADK2 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P222975 (90 Aa)

PICPHSLSFRPVILPDSAKLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRIYMSEHPLPTVNKSDQTGDWFHSLVRCLNWNDRLEQKAL

SignalP predicts non-secretion with a score of 0.104

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P83893 (90 Aa)

PICPHSLSFRPVILPDSAKLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRIYMSEHPLPTVNKSDQTGDWFHSLVRCLNWNDRLEQKAL

SignalP predicts non-secretion with a score of 0.104

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1206	ATP_NADK	16
2	23392	ATP_NADK	13
5	60168	ATP_NADK	5
1.1	102488	ATP-NAD/AcoX kinase - Molecular Function: NAD+ kinase activity (GO:0003951) - Biological Process: metabolism (GO:0008152)	13
2	119781	ATP-NAD/AcoX kinase - Molecular Function: NAD+ kinase activity (GO:0003951) - Biological Process: metabolism (GO:0008152)	12
5	133209	ATP-NAD/AcoX kinase - Molecular Function: NAD+ kinase activity (GO:0003951) - Biological Process: metabolism (GO:0008152)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U253456	Solanum tuberosum #3

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