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Unigene SGN-U281519

Unigene Basic Information

Unigene ID:	SGN-U281519
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	281519
mRNA sequence:	Length: 384 bp

>SGN-U281519 Solanum tuberosum #4 (3 members)
GAGGTCTCCTAGAACCACTTTCTCGGTGCTGGAAGGCGTCGGAAGAACTCTCAAGGGGAGGGATCTTCGTCAGGTTCGCAATGCTGTGTG
GCGCCAAACAGGTTTTCAGGATTGAAGTATGCTCATGTTGATATAACTATAGATCTTGTTTTTGATATCTGAAGTTTAAAACTGACCTTA
TGTTTTTGTTATATTCTGTATATAGGCAATGAAGAAACGTTTTTACAAATTTCTTCAGTTTTTATATGGCCTAAGTGTATTGAAAGAAGA
TGAAGTTATTATCTAGAAAAAAATTGCTGATATGTTATATCAACATGTACATTTTGGGCAATGATCTCTTTGAATATTAATGCGAAAGAG
TTTTGTTGAATTCTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	2

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|224140081\|ref\|XP_002323415.1\|	74.7	3e-12	94.59	111 bp (28.9%)	3
Description:	predicted protein [Populus trichocarpa] >gi222868045\|gb\|EEF05176.1\| predicted protein [Populus …
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P223464 (49 Aa)

NHFLGAGRRRKNSQGEGSSSGSQCCVAPNRFSGLKYAHVDITIDLVFDI

SignalP predicts non-secretion with a score of 0.03

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P84160 (53 Aa)

RSPRTTFSVLEGVGRTLKGRDLRQVRNAXVAPNRFSGLKYAHVDITIDLVFDI

SignalP predicts non-secretion with a score of 0.085

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	373	DUF584	45
2	22287	DUF584	37
5	57050	DUF584	17
1.1	101722	Protein of unknown function DUF584	43
2	121720	Protein of unknown function DUF584	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U251677	Solanum tuberosum #3

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