Sol Genomics Network

Unigene SGN-U288215

Unigene Basic Information

Unigene ID:	SGN-U288215
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	288215
mRNA sequence:	Length: 716 bp

>SGN-U288215 Solanum tuberosum #4 (1 members)
CCACCCCACAGCCGTCCATTCCAAGCTTCCAATGAACCGTTGCCATTGTGTCACTGCCTATTCACCGCGAAACATGAATGTCACTGACGA
ACGATTTCGGAGCGGAACGAATCCAGAAAATGGATTACTTTCTATAAATTCCTCGAATCTCAACTCCATTTCGTAAAAATAAAATTAAAA
ATATTGTTCTTTTTGTATTCCTGGTTTATGTGGTGATCGAATTTTCAATTTTTTTACTGGTAGTGATTCCTACTTTTCTTCAATTGCATT
TCTCCTTTTTCCATTTCACGGTTGAGAATTCGTGATTCCTTATCAGAGGAATCGATCCGATTTGACTAATTTCACTTTTCGTCTGTATAA
ATACCAGAGTATCTAGGTTGAGGAACGTAATTTCAAGCTGCGATCGGCTTTTTCCCCTGAACGAGCAAACACAGGTTGTGGGTTCGAGTT
AGCAAGGGACGTATAATCTCAACTACAATCCATTATGGCGGTTGATGAAATTCAGCAGTCTGATCCATTGGTTGTGATACGCAATGGAAA
GGAGATCATATTGCAGGCATTCGACTGGGAATCTATAAACATGATTGGTGGATAAATTTAGATACGAAAGTTCCTGATATTGCAAAGTCT
GGTTTCACAACTGCTTGGCTGCCTNCGGTGTGTCAGTCATTGGCTCCTGAAGGNTACCTTCCACAGAACCTTTATTCTCTCATTCT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
amy23	alpha-amylase 23	alpha amylase

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E414882
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	669	Alpha_amyl_cat Glyco_hydro_13	28
2	22537	Alpha_amyl_cat Glyco_hydro_13	26
5	56978	Alpha_amyl_cat Glyco_hydro_13	19
1.1	101982	Glycoside hydrolase family 13 - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975) Alpha-amylase beta-sheet C-terminal Alpha amylase catalytic region - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975)	26
2	119001	Glycoside hydrolase family 13 - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975) Alpha-amylase beta-sheet C-terminal Alpha amylase catalytic region - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975)	23
5	131778	Glycoside hydrolase family 13 - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975) Alpha-amylase beta-sheet C-terminal Alpha amylase catalytic region - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U246641	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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