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Unigene SGN-U298071

Unigene Basic Information

Unigene ID:	SGN-U298071
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	298071
mRNA sequence:	Length: 438 bp

>SGN-U298071 Solanum tuberosum #4 (1 members)
GGCGATTCGGTGTCCGATGGATCTAGAGGTGGTACGCCGCCATGCCCTCTTCGGCGACGACGACTCCCTAGGCGGCATTTGTCAACTCCG
GCGATGCGCTTGTCGATTGGAACTCTCTCCAGATTGATCGTTACGATGTTCGCCACCTTCTCTCCGGTCCTCCACCTTCCCGGGCGTCGA
TCTCACTCTTCTTCTTCGTCTAATCTCGGTTGATGCTTCAATTCAGCTCGAGCTCGATCATGAACGTTACCTCGATCTTCCTCTGGCTTC
AGCATGAACCAGGATTTAGAAGAAGGTGATGAGTCGGCAGATGCTGTTGCCTATCGTGCTGTGGGTTTCTCATATGGGAAACACGGATGA
TTTTGCGTGACAGGAAAAGTTCTGAGGTCCAGGAAAGCTCTGGGCTTCCGTCCCTCCTTTCAAGTGCCTGAAGCCTTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TBSK	Tuber Skin	4812	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E563635
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255577121\|ref\|XP_002529444.1\|	63.5	4e-12	85.29	102 bp (23.3%)	1
Description:	RNA binding protein, putative [Ricinus communis] >gi223531060\|gb\|EEF32910.1\| RNA binding protei…
arabidopsis	blastx	At5G55100.2	59.7	2e-13	82.35	102 bp (23.3%)	1
Description:	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein \| chr5:22378627-22381890 REVERSE
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P240386 (70 Aa)

GDSVSDGSRGGTPPCPLRRRRLPRRHLSTPAMRLSIGTLSRLIVTMFATFSPVLHLPGRRSHSSSSSNLG

SignalP predicts non-secretion with a score of 0.163

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P95946 (146 Aa)

AIRCPMDLEVVRRHALFGDDDSQAAFVNSGDALVDWNSLQIDRYDVRHLLSGPPPSRAVDLTLLLRLISVDASIQLELDHERYLDXSSGF
SMNQDLEEGDESADAVAYRAGVSHMGNTDDFAVTGKVLRPGKLWASVPPFKCLKPS

SignalP predicts non-secretion with a score of 0.082

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	56	Dehydrin	221
2	31513		2
5	96111		1
1.1	103898	SWAP/Surp - Molecular Function: RNA binding (GO:0003723) - Biological Process: RNA processing (GO:0006396)	5
2	125099	SWAP/Surp - Molecular Function: RNA binding (GO:0003723) - Biological Process: RNA processing (GO:0006396)	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U267791	Solanum tuberosum #3

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