Sol Genomics Network

Unigene SGN-U570355

Unigene Basic Information

Unigene ID:	SGN-U570355
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1287 bp

>SGN-U570355 Tomato 200607 #2 (21 members)
CGTAAAAGAGCCTTCAGCTAATTCAACTTTTCTATATCATCTTCATCACTAATCTCATCGGTAAATTAATATTTAGCAGCATGCCGTCAG
TCTCCGGTCGGGTCGTCTGTGTTACCGGTGCCGGAGGCTTCATCGCCTCTTGGCTCGTTAAACTTCTTTTGGAAAAAGGCTACACTGTTA
GGGGAACTGTAAGAAATCCTGATGATCCAAAGAATTGTCATTTGAGAGAACTTGAAGGAGCAAAAGAGAGGCTAACACTATGCAGAGGTG
ATCTTCTTGATTATCAGAGTTTGCGTGAAGCAATCAATGGCTGTGACGGAGTTTTCCACACAGCTTCACCAGTTACTGATGATCCAGAAC
AAATGGTGGAGCCAGCAGTAATTGGTACTAAGAATGTGATAACAGCAGCAGCAGAGGCCAATGTAAGACGCGTTGTGTTTACTTCCTCAA
TTGGAGCTGTGTACATGGACCCAAGCAGAGACCCTGAAAAAGTGGTTGACGAGACTTGCTGGAGCGATCCTGATTTTTGCAAGAACACTA
AGAATTGGTATTGTTATGGTAAGATGGTGGCAGAACAAGCAGCGTGGGATGAGGCGAGGGAGAAAGGAGTTGATTTAGTCGCGATAAATC
CAGTGTTGGTGCTTGGACCATTGCTACAAAATACTGTGAATGCTAGTGTTCTTCATATCCTCAAGTACCTTACTGGCTCAGCTAAAACAT
ATGCTAATTCAGTTCAAGCATATGTACATGTTAAGGATGTGGCTTTAGCTCACATACTTCTCTATGAAACTCCTTCAGCATCAGGACGTT
ACCTCTGTGCTGAGAGTGTGCTTCATCGTGGTGACATCGTTGAAATTCTAGCCAAATTCTTCCCTGAATATCCCATCCCCACAAAGTGTT
CGGATGTGACGAAGCCAAGGGTAAAACCATACAAATTCTCAAACCAAAAATTGAAGGATTTGGGGATGGAATTTACACCAGTGAAACAAT
GCTTATATGAGACAGTGAAGAGTCTACAAGAGAAAGGTCACCTTCCAATTCCAACTCAAAAGGACGAAATTATTCGAATTCAGACTTAGC
TTTATTATGTAAATAATAATAATGTGTAATTTTATTTTTTTTACTGTGTTCAAGGAAATGTTTTTATTATTTCCGTTGTTGTTATGAGTA
TATATTAGCATAAAACATGAATAATGTTATCATGGACATTGCTTTTTATCCATAAGAATAACATATTTATGTAATAATTTCTGTATATCT
TTGGAATGTACGTTCAACTTAATGATC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ccr1	cinnamoyl-CoA reductase	cinnamoyl-CoA reductase

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LeMiToFr02	fruit	18697	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 1 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U318660	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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