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Unigene SGN-U588169

Unigene Basic Information

Unigene ID:	SGN-U588169
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 290 bp

>SGN-U588169 Tomato 200607 #2 (1 members)
GCTTAATGCTCATGATTCGCATCATACACCAGCACCAGCTGAGAATGTTCAGGCGCCGAATTCCATCAATGGATTCATACTTAGACAAGG
TCAATATTGCTTTATGGCCACGTTTCAAGATGGTCTTTGACTTGCACCTCCACAGCCTGCGAAATGCCAATATCAGGACTCTCTGGGAAG
ATGATGTTCACCCACATTATGTCATAAGGCGCTATGCTGAGTTTTCTGCGTCCCTTATTCACCTTAATGTAGAATACAAAGATGGCCAGC
TTGAACTGAATCTGGAGAGA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc02g094090	Solyc02g094090

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E280843
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|218193052\|gb\|EEC75479.1\|	180	4e-44	85.42	288 bp (99.3%)	3
Description:	hypothetical protein OsI_12062 [Oryza sativa Indica Group]
arabidopsis	blastx	At1G71270.1	170	2e-43	83.33	288 bp (99.3%)	3
Description:	Symbols: TTD8, POK \| POK (POKY POLLEN TUBE) \| chr1:26867398-26873479 FORWARD
swissprot	blastx	Q5TJF0	69.3	5e-12	32.35	285 bp (98.3%)	3
Description:	Vacuolar protein sorting-associated protein 52 homolog OS=Canis familiaris GN=VPS52 PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P679019 (97 Aa)

XLNAHDSHHTPAPAENVQAPNSINGFILRQGQYCFMATFQDGLDLHLHSLRNANIRTLWEDDVHPHYVIRRYAEFSASLIHLNVEYKDGQ
LELNLER

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P719792 (96 Aa)

LMLMIRIIHQHQLRMFRRRIPSMDSYLDKVNIALWPRFKMVFDLHLHSLRNANIRTLWEDDVHPHYVIRRYAEFSASLIHLNVEYKDGQL
ELNLER

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U317193	Tomato 200607 #1

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