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Unigene SGN-U624462

Unigene Basic Information

Unigene ID:	SGN-U624462
Unigene Build:	Coffea canephora #3
Date:	2010-04-15
Organism:	C.canephora
Alternative ID:	none
mRNA sequence:	Length: 433 bp

>SGN-U624462 Coffea canephora #3 (1 members)
AGGAAAGAATAAATGGGCTGTTTTAGTAGGCTGCAACTATCCAAACACAAAATATACATTGCATGGATGCATTAATGATGTTCAAGCGAT
GAGAGATTTGCTCGTTAAGAAGTTTGGATTTGATCCAAAAAACATTAACCTTTTGACCGATAAACCAGGCAGTTTCATCTTGCCCACAGG
TGCCAACATCATGAAGGCACTTAATCGAATCGTTGATCAGGCTCAATCTGGTGATGTCCTATATTTTCACTATAGTGGCCATGGAACACT
TATTGACAAGCCATTCCTTCCATTCTCCAAAGAAGAGGCAATTGTTCCTATTGACTTCAATCTGATCACAAATGTGGACTTTAGACATCT
GGTGAATAAGTTGCCAAAAGGAGTAACTTTCACTGTCCTTTCTGATTCTTGCCACAGTGGAGGCCTCATTGAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Coffea canephora	cccs30w	Endosperm and perisperm 30 week after pollination	12592	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E633746
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|224137528\|ref\|XP_002322580.1\|	213	8e-54	68.49	432 bp (99.8%)	3
Description:	predicted protein [Populus trichocarpa] >gi222867210\|gb\|EEF04341.1\| predicted protein [Populus …
arabidopsis	blastx	At5G04200.1	193	3e-50	64.63	429 bp (99.1%)	3
Description:	latex-abundant protein, putative (AMC9) / caspase family protein \| chr5:1153894-1154871 FORWARD
swissprot	blastx	Q9FYE1	193	3e-49	64.63	429 bp (99.1%)	3
Description:	Metacaspase-9 OS=Arabidopsis thaliana GN=AMC9 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P774872 (145 Aa)

XGKNKWAVLVGCNYPNTKYTLHGCINDVQAMRDLLVKKFGFDPKNINLLTDKPGSFILPTGANIMKALNRIVDQAQSGDVLYFHYSGHGT
LIDKPFLPFSKEEAIVPIDFNLITNVDFRHLVNKLPKGVTFTVLSDSCHSGGLID

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P791065 (144 Aa)

GKNKWAVLVGCNYPNTKYTLHGCINDVQAMRDLLVKKFGFDPKNINLLTDKPGSFILPTGANIMKALNRIVDQAQSGDVLYFHYSGHGTL
IDKPFLPFSKEEAIVPIDFNLITNVDFRHLVNKLPKGVTFTVLSDSCHSGGLID

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U356797	Coffea canephora #2

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