Sol Genomics Network

Unigene SGN-U196105

Unigene Basic Information

Unigene ID:	SGN-U196105
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	196105
mRNA sequence:	Length: 1400 bp

>SGN-U196105 Capsicum annuum #1 (76 members)
TAAAGGTTAAGGAAAGCATAGCAGTAGCTTTAAGCTAAGCACTTAATTTTCAGCAATGGCTTCTTCAGTGATGTCCACAGCAACTGTTGC
CACCGGCGCCAATGCTGCACAAGCCAGCATGATTGCATCCTTCAATGGCCTTAAATCCGCAGCCTCTTTCCCTGTTACAAGAAAGCAAGA
CCTTGACATCACCTCCATTGCTAGCAATGGTGGAAGAGTCCAATGCATGCTGGTATGGCCACCAATTAACAAGAAGAAGTACGAGACTCT
TTCATACCTTCCTGATTTGTCCGACGAGCAATTGCTCAAGGAAATTGAGTACCTTTTGCAAAAGGGATGGGTTCCTTGTTTGGAATTCGA
GACTGAGCACGGATTTGTGTACCGTGAGCACCACAGGTCACCTGGATACTACGATGGCAGGTACTGGACCATGTGGAAGTTGCCCATGTT
CGGGTGTACTGATGCTACCCAGGTCTTGAATGAAGTCCAGGAGGCAAAGAAGGCTTACCCACAGGCCTGGATCCGTATCATCGGATTTGA
CAACGTTCGTCAAGTGCAGTGTATCAGTTTCATCGCCTACAAGCCCGAAGGCTACTAAATTCTCCATGTTTAATGTATAACTTGGCCCTA
TATCTTTAAGGGAAGCTCGTTTAAATCCTCCTCAAGTTTTTTCCCGCAGAAACTGTATTGATTTTCCATTGTTTTCCTTTTCTCTATTCA
GTGTATGCTCTTGGATTCCAGTTGAGTTTATGAGAACTAATAATAATAATCATTTGTTTCTTTGCTTAAAAAAAAAAAAAAAAAAAACTC
GAGACTTTTTTTTTTTTTTTTTGAAGAAAACAAAGTACAAATTCCATTAACCAGAATCCAGAAGGCCAGTAGAACCAACAGTTACTACAT
TGCTTCAACTAAATTCTACAATAAGATTTGACGACAAACAGTAAAACAGTAACAATCTTCTACTTCCTAAGCCCTTTCACCACGAATCCT
CCTAGCAAGTTGAATATCCTTAGGCATAATCGTGACCCTCTTAGCATGAATAGCACATAGATTAGTATCTTCAAACACTCCAACAAGGTA
TGCCTCAGCAGCCTCTTGCAGAGCAGCCACAGCACTGCTCTGGAACCTCAAATCCGTCTTGAAATCCTGAGCGATCTCCCTCACCAGCCT
CTGAAAGGGCAACTTCCTGATCAACAACTCAGTCGACTTCTGATACTTCCTAATTTCTCTTAGAGCCACAGTTCCTGGTCGGAAACGGTG
AGGCTTTTTCACTCCTCCAGTTGCCGGAGCTGATTTTCTGGCTGCCTTTGTAGCTAGTTGCTTCCTTGGTGCCTTTCCACCAGTAGATTT
GCGAGCAGTTTGCTTAGTACGCGCCATTTTTAATGTATACTACTAAGAAT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AF065615	ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	40
Capsicum annuum	KS07	Flower bud	4235	15
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	16
Capsicum annuum	KS10	Hairy root	2179	3
Capsicum annuum	KS12	Placenta	4279	2

mRNA member sequences (76)

Alignment image suppressed for unigene with 76 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	185	Hist_TAF Histone_H3 Histone_core_D	78
2	22077	Hist_TAF Histone_H3 Histone_core_D	76
5	56332	Hist_TAF Histone_H3 Histone_core_D	75
1.1	101547	Histone-fold Histone-fold/TFIID-TAF/NF-Y - Molecular Function: DNA binding (GO:0003677) Histone H3 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001) Histone core - Molecular Function: DNA binding (GO:0003677)	77
2	118503	Histone-fold Histone-fold/TFIID-TAF/NF-Y - Molecular Function: DNA binding (GO:0003677) Histone H3 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001) Histone core - Molecular Function: DNA binding (GO:0003677)	76
5	128991	Histone-fold Histone-fold/TFIID-TAF/NF-Y - Molecular Function: DNA binding (GO:0003677) Histone H3 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001) Histone core - Molecular Function: DNA binding (GO:0003677)	75

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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