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Unigene SGN-U196675

Unigene Basic Information

Unigene ID:	SGN-U196675
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	196675
mRNA sequence:	Length: 444 bp

>SGN-U196675 Capsicum annuum #1 (2 members)
CTGCCAACCACTTCTCTCTCTCTCTTGTTTTTCTCTGCTGCTAACTCTCCGTACCGAAGAACCGCAACTATGGCAGCTACATTTTCTACT
GTATCGAATTTAGGTTCACTTTCAGCTCCCCGAGTTGCGAACCCTACATATGCTGTTTCTCCCAAGCTGGTGAAATCTTCATTCTCATCA
TCATGCTTCTTTTCTGGATCTTTGCGTCTCACAACTTCATCGAACCGTTCGGTTTACAGAAAAACCGGAGGTTCATCTGTTTCCATTCAA
GCTTCTGCGCAGGTGACCGACTTGCAATCCAAAGTGACACACAAAGTTTATTTTGATATCAGCATTGGGAATCCTGTCGGAAAGCTTGCT
GGGCGAATTGTAATTGGATTGTATGGTGATGATGTGCCCCAGACAGCAGAAAATTTCCGTGCACTCTGCACAGGTGAAAAGGGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	2

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|21593963\|gb\|AAM65904.1\|	114.8	2.4e-25	54.48	375 bp (84.5%)	1
Description:	peptidylprolyl isomerase-like protein [Arabidopsis thaliana]
arabidopsis	blastx	At5g13120.1	114	2.9e-26	54.48	375 bp (84.5%)	1
Description:	At5g13120.1 68412.m01387 peptidyl-prolyl isomerase protein SP:Q9ASS6; chloroplast stromal cyclo…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P31688 (125 Aa)

MAATFSTVSNLGSLSAPRVANPTYAVSPKLVKSSFSSSCFFSGSLRLTTSSNRSVYRKTGGSSVSIQASAQVTDLQSKVTHKVYFDISIG
NPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKG

SignalP predicts non-secretion with a score of 0.179

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P150644 (148 Aa)

LPTTSLSLLFFSAANSPYRRTATMAATFSTVSNLGSLSAPRVANPTYAVSPKLVKSSFSSSCFFSGSLRLTTSSNRSVYRKTGGSSVSIQ
ASAQVTDLQSKVTHKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKG

SignalP predicts non-secretion with a score of 0.34

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	101	CSA_PPIase	127
2	22065	CSA_PPIase	84
5	56333	CSA_PPIase	74
1.1	101457	Peptidyl-prolyl cis-trans isomerase cyclophilin type - Biological Process: protein folding (GO:0006457)	137
2	126769		2
5	135513		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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