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Unigene SGN-U196699

Unigene Basic Information

Unigene ID:	SGN-U196699
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	196699
mRNA sequence:	Length: 452 bp

>SGN-U196699 Capsicum annuum #1 (2 members)
CATTCTTTTTTCTTCTCTCGCTTTCCATATCCGCTTCTTGCAATTTTCTCATAAAAATTTAAGCTTTTCTTCTTTATAAATCTTCATTTT
TAACAGCATATAATAAACTAATTATAAATCCTGGGCAATATGAAGAGGAAACCCTAGCTAGTTCTTGGAAAAAACCCTAATTTGCTTCAA
CCCTTTTCTTGTTTTTAGTCAAAGACTCAATTTTTAGCTTGTGGGGTTGTTAGAAATTGCTTGAAAATAAGGATAATATGGAAAATACAG
TACCTAGGACTGTAGAAGAAGTATTCACTGATTTCAAAGGTCGTAGAGCTGGTCTAATCAAAGCACTTACTGCAGATGTTGAGAAGTTTT
ATCAGCCAGTGTGATCCTGAAAAGGACAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGCAAGCTAACCTCCCTGTGGAGGAGGTG
CC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	2

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25346630\|pir\|\|A86280	64.7	1.8e-18	76.47	102 bp (22.6%)	1
Description:	gi\|25346630\|pir\|\|A86280 F14L17.29 protein - Arabidopsis thaliana gi\|7262694\|gb\|AAF43952.1\| Cont…
arabidopsis	blastx	At1g14510.1	65.08	1.6e-11	70	120 bp (26.5%)	1
Description:	At1g14510.1 68408.m01554 nucleic acid binding protein (alfin-1) -related similar to nucleic aci…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P31715 (65 Aa)

MENTVPRTVEEVFTDFKGRRAGLIKALTADVEKFYQPVDPEKDNLCLYGLPNETWQANLPVEEVP

SignalP predicts non-secretion with a score of 0.033

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P150668 (46 Aa)

KLLENKDNMENTVPRTVEEVFTDFKGRRAGLIKALTADVEKFYQPV

SignalP predicts non-secretion with a score of 0.031

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	322	Znf_PHD	50
2	22192	Znf_PHD	47
5	56419	Znf_PHD	45
1.1	101712	Zinc finger PHD-type - Molecular Function: protein binding (GO:0005515) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: zinc ion binding (GO:0008270) Zinc finger FYVE/PHD-type - Molecular Function: zinc ion binding (GO:0008270)	44
2	118643	Zinc finger FYVE/PHD-type - Molecular Function: zinc ion binding (GO:0008270) Zinc finger PHD-type - Molecular Function: protein binding (GO:0005515) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: zinc ion binding (GO:0008270)	40
5	129117	Zinc finger FYVE/PHD-type - Molecular Function: zinc ion binding (GO:0008270) Zinc finger PHD-type - Molecular Function: protein binding (GO:0005515) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: zinc ion binding (GO:0008270)	39

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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