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Unigene SGN-U197177

Unigene Basic Information

Unigene ID:	SGN-U197177
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	197177
mRNA sequence:	Length: 436 bp

>SGN-U197177 Capsicum annuum #1 (3 members)
CCTCATACTGGATTGACAGTGAGCAGAGAGTAGGTCCTGGAAACAAAATAAGTTACAAGTTAATGCATGGTGAGTTGGTTGAGAAAGAGA
ATTTCTTACCAGATGGTCCTATTACAATTGGGGTGACATCTGGTGCATCCACTCCTGATAAGGTTGTTGAAGATGTCCTTATCAGGGTGT
TTGATATCAAGCGTGAAGAAGCCTTACAATTGGCCTAAACAAGACTGTGGAGCCCCGAGATAACAAGAGTGCTGCAATTTGGGTCCCCCC
CCACCCTGCGCTCCCAAAAAAAAAAAAAAAGAAAATCTTTGTAGGATATGCTGCAGGTGCTAGTTCAAGTATGCTAAATATACGCCTTCT
TGTTTATGTATGACTCAAGCTTTTCAATATTAGTATGGCACTGTCAGAATCAATGCCAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	3

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|5911363\|gb\|AAD55762.1\|	137.9	2.6e-32	90.14	213 bp (48.9%)	3
Description:	gi\|5911363\|gb\|AAD55762.1\| putative host factor [Nicotiana tabacum]
arabidopsis	blastx	At4g34350.1	129	8.3e-31	85.92	213 bp (48.9%)	3
Description:	At4g34350.1 68411.m04438 ISPH annotation temporarily based on supporting cDNA gi\|27368104\|gb\|AY…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P151147 (71 Aa)

SYWIDSEQRVGPGNKISYKLMHGELVEKENFLPDGPITIGVTSGASTPDKVVEDVLIRVFDIKREEALQLA

SignalP predicts non-secretion with a score of 0.027

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P32190 (87 Aa)

SYWIDSEQRVGPGNKISYKLMHGELVEKENFLPDGPITIGVTSGASTPDKVVEDVLIRVFDIKREEALTIGLNKTVEPRDNKSAAIW

SignalP predicts non-secretion with a score of 0.027

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1982	Intron_nuc_2 LytB	9
2	24101	Intron_nuc_2 LytB	9
5	58155	Intron_nuc_2 LytB	9
1.1	103133	LytB protein - Biological Process: isopentenyl diphosphate biosynthesis mevalonate-independent pathway (GO:0019288)	8
2	121249	LytB protein - Biological Process: isopentenyl diphosphate biosynthesis mevalonate-independent pathway (GO:0019288)	7
5	131487	LytB protein - Biological Process: isopentenyl diphosphate biosynthesis mevalonate-independent pathway (GO:0019288)	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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