Sol Genomics Network

Unigene SGN-U197578

Unigene Basic Information

Unigene ID:	SGN-U197578
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	197578
mRNA sequence:	Length: 694 bp

>SGN-U197578 Capsicum annuum #1 (3 members)
AAACAATGGAACCCGAAAAACCCCAAATGGAAGATGAAATTACCAAAAAACCCTCCAAAAAAGAAGCCGCCAAGGAAGAACGCCGCCGCA
AAAAGGAAGCATTGGCCGCCGCATCCGCCGCCGTAGTCTCCGCCGTCACAATCGATGAATCCGACCCGCTTTCAAGCAACTACGGGGACA
TCGAGCTAAACGATCTACAATCCAAATCAATAACGGGTCGAAAATGGACAGAAGTCGGGTCAATTATACCCGAATTGAAGGACCAGGTGA
TACTGACTAGGGGAAGAGTACATACGATTCGACCGGTTAGTAAGAAGATGGCGTTTGTCGTTGTGAGAGAACGAGGATTTACGGTGCAAT
GTGTGTTGAATGTGAAGCCTGAATTGGTTAGTTTACAAATGGTGAAATTTGCTACTAGTTTGAGTAAAGAGTCAATTGTTGACATTGAAG
GCAGTGTCTCGATACCAGCTAAGCCAATTACGGGTTGCACTCAACAACAGGTGGAAGTACAAATAAGCAAACTTTATTGTGTCAATAGGG
CTATGCCCACACTACCTATTAATATCGAGGATGCTGCTAGAAGTGAAGTGGAGATAGAACAAGCTTTAGAGAAAGGAGAGCAGCTTGTTC
GTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGATATCCGCACACCTGCAAATCAAGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	2

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	337	AsnS AspS_arch tRNA-synt_lys_2 tRNA_anti tRNA-synt_2	49
2	24077	GenX AsnS AspS_arch tRNA-synt_asp tRNA-synt_lys_2 tRNA_ligase_II tRNA_anti tRNA-synt_2 AspS_bact	9
5	58133	GenX AsnS AspS_arch tRNA-synt_asp tRNA-synt_lys_2 tRNA_ligase_II tRNA_anti tRNA-synt_2 AspS_bact	9
1.1	101603	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	62
2	121237	Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) nucleic acid binding OB-fold tRNA/helicase-type - Molecular Function: nucleic acid binding (GO:0003676) Aspartyl-tRNA synthetase archea/euk type - Molecular Function: aspartate-tRNA ligase activity (GO:0004815) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Aspartyl-tRNA synthetase class IIb - Molecular Function: aspartate-tRNA ligase activity (GO:0004815) - Molecular Function: ATP binding (GO:0005524) - Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	7
5	131472	Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) nucleic acid binding OB-fold tRNA/helicase-type - Molecular Function: nucleic acid binding (GO:0003676) Aspartyl-tRNA synthetase archea/euk type - Molecular Function: aspartate-tRNA ligase activity (GO:0004815) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Aspartyl-tRNA synthetase class IIb - Molecular Function: aspartate-tRNA ligase activity (GO:0004815) - Molecular Function: ATP binding (GO:0005524) - Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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