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Unigene SGN-U197674

Unigene Basic Information

Unigene ID:	SGN-U197674
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	197674
mRNA sequence:	Length: 422 bp

>SGN-U197674 Capsicum annuum #1 (3 members)
CTGATTTGGTTCGTGGTGCCAAGGATAAGAGGCTCAGGGTGAAGGGACCAGTGAGAATGCCCACCAAGGTCTTGAACATCACCACAAGAA
AGTCGCCTTGTGGAGAAGGTACAAATACATGGGACAGATTTGAGCTGCGAGTCCACAAGAGAGTGATTGACCTTTTCAGCTCACCAGACG
TTGTCAAACAAATCACCTCCATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACTATTGCTGATTCTTAGATCCCCAATTTCCTTAGGT
AGATGAATGTGCTCTGGAATTTTGGCCTGAAGACTTTATGTATTAAGTTTTTTTGGAATTACAATTGTGCTGTTAAAAAGCTAGACTTTG
ACAAAAGCGAAGTGATTTACTTAAGTTACTTGCAACTTTCATGAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1
Capsicum annuum	KS08	Anther	2304	1
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15232789\|ref\|NP_190321.1\|	162.5	1e-39	97.56	246 bp (58.3%)	3
Description:	40S ribosomal protein S20 (RPS20B) [Arabidopsis thaliana] >gi30692858\|ref\|NP_850665.1\| 40S ribo…
arabidopsis	blastx	At5g62300.1	162.5	6.4e-41	97.56	246 bp (58.3%)	3
Description:	At5g62300.1 68412.m07071 40S ribosomal protein S20 (RPS20C) ribosomal protein S20, Arabidopsis …
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005840 ribosome
GO:0003735 structural constituent of ribosome
GO:0006412 protein biosynthesis
GO:0005622 intracellular

Protein prediction analysis (3)

Prediction based on longest six frame method

>SGN-P151645 (82 Aa)

DLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS

SignalP predicts non-secretion with a score of 0.036

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P32682 (82 Aa)

DLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS

SignalP predicts non-secretion with a score of 0.036

IPR001848 Ribosomal protein S10

Prediction based on longest six frame method

>SGN-P151646 (82 Aa)

ESAIVTSTSTPGSMVMEVICLTTSGELKRSITLLWTRSSNLSHVFVPSPQGDFLVVMFKTLVGILTGPFTLSLLSLAPRTKS

SignalP predicts non-secretion with a score of 0.106

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	968	Ribosomal_S10 Ribosomal_S10_b Ribosomal_S10e/a	19
2	23603	Ribosomal_S10 Ribosomal_S10_b Ribosomal_S10e/a	11
5	57679	Ribosomal_S10 Ribosomal_S10_b Ribosomal_S10e/a	11
1.1	102313	Ribosomal protein S10 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	17
2	120448	Ribosomal protein S10 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein S10 eukaryotic and archaeal form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: small ribosomal subunit (GO:0015935)	9
5	130735	Ribosomal protein S10 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein S10 eukaryotic and archaeal form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: small ribosomal subunit (GO:0015935)	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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