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Unigene SGN-U199040

Unigene Basic Information

Unigene ID:	SGN-U199040
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199040
mRNA sequence:	Length: 357 bp

>SGN-U199040 Capsicum annuum #1 (1 members)
CCACCACCTTTTCCACCACAAAGACAAGGGAGAAGAGGGCCCAGTCGANTACGAAAAGGAAATCAAACACCATAAGCATCTTGAACAAAT
TGGTAAACTTGGCACTGCTGCTGCCGGTGCCTACGCCTTGCATGAGAAACATGATGCTAAGAAGGATCCAGAGCATGCACACAAACACAA
GATAGAGGAAGAGATTGCACCTGCCTGCTGCTGTTGGTGCTGGAGGATTTGGATTGCATGAGCACCATGACAAGAAGGATGCAAAGAAAG
AGGAAAAAGAACCTGAAGGGGGACACCACCACCACCACTTCTAAATTCCTATATCTCAATTAAATTTTTAATATTTGTGGAATTTCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AY496130	stress-ripening protein AY496130

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E513295
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|3661618\|gb\|AAC61780.1\|	110.9	3.9e-24	92.45	159 bp (44.5%)	2
Description:	fruit-ripening protein [Solanum lycopersicum] >gi68500144\|gb\|AAY97998.1\| ASR1 [Solanum lycopers…
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006950 response to stress

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P40030 (103 Aa)

HHLFHHKDKGEEGPVXYEKEIKHHKHLEQIGKLGTAAAGAYALHEKHDAKKDPEHAHKHKIEEEIAPAAAVGAGGFGLHEHHDKKDAKKE
EKEPEGGHHHHHF

SignalP predicts non-secretion with a score of 0.027

IPR003496 ABA/WDS induced protein

Prediction based on longest six frame method

>SGN-P153035 (103 Aa)

KWWWWCPPSGSFSSFFASFLSWCSCNPNPPAPTAAGRCNLFLYLVFVCMLWILLSIMFLMQGVGTGSSSAKFTNLFKMLMVFDFLFVXDW
ALFSLVFVVEKVV

SignalP predicts secretion with a score of 0.49

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	313	Nucleoplasmin Hs1/Cortactin	51
2	22365		33
5	56576		31
1.1	101472	Prenylated rab acceptor PRA1	112
2	118771		31
5	129247		29

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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