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Unigene SGN-U199204

Unigene Basic Information

Unigene ID:	SGN-U199204
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199204
mRNA sequence:	Length: 309 bp

>SGN-U199204 Capsicum annuum #1 (1 members)
TCCAGATCCATCTCTTCCCCCCTCTCACCTTCTCTCTTAACATTACAGATAGGAACGAAGGAAAATGGTTAAGATTTGCTGTATAGGAGC
TGGATATGTTGGGGGGCCCACCATGGCCATCATAGCACTCAAATGCCCTTCTATTGAAGTGTTGTTGTTGATATTTCTGTGCCTCGTATC
ACAGCCCTGGAACAGTGACCAGCTTCCCATCTATGAGCTAGGCCTTGAGGATGTAGTGAAGGAGTGCCGAGGCAGGAACCTCTTCTTCAG
CANAGATGTGGAGAAACGCGCGAGGGAGGCTGATATCGT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E511500
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15242316\|ref\|NP_197053.1\|	127.5	4.3e-29	74.07	243 bp (78.6%)	2
Description:	UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] >gi9755804\|emb\|CAC01748.1\| UDP-glu…
arabidopsis	blastx	At5g15490.1	127.5	1.1e-30	74.07	243 bp (78.6%)	2
Description:	At5g15490.1 68412.m01675 UDP-glucose dehydrogenase-related protein UDP-glucose 6-dehydrogenase …
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P153203 (86 Aa)

ERRKMVKICCIGAGYVGGPTMAIIALKCPSIEVLLLIFLCLVSQPWNSDQLPIYELGLEDVVKECRGRNLFFSXDVEKRAREADIV

SignalP predicts non-secretion with a score of 0.317

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P40186 (82 Aa)

MVKICCIGAGYVGGPTMAIIALKCPSIEVLLLIFLCLVSQPWNSDQLPIYELGLEDVVKECRGRNLFFSXDVEKRAREADIV

SignalP predicts secretion with a score of 0.439

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	783	UDPG_MGDP_dh	24
2	22600	UDPG_MGDP_dh	24
5	56736	UDPG_MGDP_dh	24
1.1	102026	UDP-glucose/GDP-mannose dehydrogenase - Biological Process: electron transport (GO:0006118)	24
2	118961	UDP-glucose/GDP-mannose dehydrogenase - Biological Process: electron transport (GO:0006118)	24
5	129347	UDP-glucose/GDP-mannose dehydrogenase - Biological Process: electron transport (GO:0006118)	24

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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