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Unigene SGN-U199471

Unigene Basic Information

Unigene ID:	SGN-U199471
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199471
mRNA sequence:	Length: 410 bp

>SGN-U199471 Capsicum annuum #1 (1 members)
GTTAATAGGATGATGACAATTATTGACCTTGCACGAAATATTCGTGATCGTCACAGCAAACCTATTAAAACTCCGCTAAGGGAAATGGTG
GTTGTACATCCGGATTCAGAATTCCTTGATGACATTGCGGGCCAACTAAGAGAGTATGTACTCGAAGAGCTAAACATTAAGTCTTTGGTC
CCATGCAATGATACATTGAAGTATGCTTCTCTGCGTGCAGAGCCAGATTTCAGTGTGTNAGGAAAAAGGTGGGGGAAGTCGATGGGTGTT
GTGGCCAAGGAAGTTAAGGCCAGGTCAACAGCAGATATTATTGCTTTTGAGAAAGCGGGAGAAATTACAATTGCTTCACATACTTTGAAG
CTTACTGATATCAAGATTGTCCGGGGTTTAAACGTCCTGAATAATATGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E508034
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At4g10320 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30681405\|ref\|NP_192770.2\|	199.5	7.7e-51	76.56	384 bp (93.7%)	1
Description:	isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative [Arabidopsis thaliana]
arabidopsis	blastx	At4g10320.1	199.5	4.4e-52	76.56	384 bp (93.7%)	1
Description:	At4g10320.1 68411.m01533 isoleucine-tRNA ligase - like protein isoleucine--tRNA ligase, Homo sa…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34031 (137 Aa)

VNRMMTIIDLARNIRDRHSKPIKTPLREMVVVHPDSEFLDDIAGQLREYVLEELNIKSLVPCNDTLKYASLRAEPDFSXVRKKVGEVMGV
VAKEVKARSTADIIAFEKAGEITIASHTLKLTDIKIVRGLNVLNNMX

SignalP predicts non-secretion with a score of 0.064

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P153481 (136 Aa)

VNRMMTIIDLARNIRDRHSKPIKTPLREMVVVHPDSEFLDDIAGQLREYVLEELNIKSLVPCNDTLKYASLRAEPDFSVXGKRWGKSMGV
VAKEVKARSTADIIAFEKAGEITIASHTLKLTDIKIVRGLNVLNNM

SignalP predicts non-secretion with a score of 0.064

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	385	tRNA-synt_val tRNA-synt_I tRNA-synt_1a Leu-tRNA-synt1a tRNA-synt_ile	44
2	23832	tRNA-synt_val tRNA-synt_I Leu-tRNAsynt1a tRNA-synt_1a Leu-tRNA-synt1a tRNA-synt_ile tRNA-synt_met	10
5	57904	tRNA-synt_val tRNA-synt_I Leu-tRNAsynt1a tRNA-synt_1a Leu-tRNA-synt1a tRNA-synt_ile tRNA-synt_met	10
1.1	101679	tRNA synthetase valyl/leucyl anticodon-binding Aminoacyl-tRNA synthetase class 1a anticodon-binding	47
2	120469	Aminoacyl-tRNA synthetase class Ia - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Isoleucyl-tRNA synthetase class Ia - Molecular Function: isoleucine-tRNA ligase activity (GO:0004822) - Molecular Function: ATP binding (GO:0005524) - Biological Process: isoleucyl-tRNA aminoacylation (GO:0006428) Aminoacyl-tRNA synthetase class 1a anticodon-binding tRNA synthetase valyl/leucyl anticodon-binding	9
5	130756	Aminoacyl-tRNA synthetase class Ia - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Isoleucyl-tRNA synthetase class Ia - Molecular Function: isoleucine-tRNA ligase activity (GO:0004822) - Molecular Function: ATP binding (GO:0005524) - Biological Process: isoleucyl-tRNA aminoacylation (GO:0006428) Aminoacyl-tRNA synthetase class 1a anticodon-binding tRNA synthetase valyl/leucyl anticodon-binding	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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