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Unigene SGN-U199502

Unigene Basic Information

Unigene ID:	SGN-U199502
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199502
mRNA sequence:	Length: 363 bp

>SGN-U199502 Capsicum annuum #1 (1 members)
GGATGTTTGATGGAGAACCATCAGCCCAACCCTATGGGCATCTTGGCCCAAGAGATGTTTGCAGCCCGTCCCACCAAGAACTCGCACTTG
AAGCTGCTAGACAGGGCATTGTTCTTCTTAAGAATCATGGGCCTGCTCTTCCTCTTTCTCCTCGACGCCATCATACTATTGCTGTCATTG
GACCTAATTCTGATGTTACCGTCACAATGATTGGAAATTACGCAGGTGTTGCATGTGGATACACAAGCCCATTACAAGGAATAACAAAGT
ATGCAAAGACCATTCACGAAAAAGGTTGTGGTGATGTAGCATGCACTGACGACAAATTATTTGCTGGAGCTGTAAATGCTGCACATCAAG
CGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E505520
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25518461\|pir\|\|D86156	190.3	5e-48	75	360 bp (99.2%)	3
Description:	gi\|25518461\|pir\|\|D86156 hypothetical protein T14P4.8 - Arabidopsis thaliana gi\|9972374\|gb\|AAG10…
arabidopsis	blastx	At1g02640.1	190.3	1.3e-49	75	360 bp (99.2%)	3
Description:	At1g02640.1 68408.m00196 glycosyl hydrolase family 3 similar to beta-xylosidase GB:Z84377 GI:21…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34059 (122 Aa)

GCLMENHQPNPMGILAQEMFAARPTKNSALEAARQGIVLLKNHGPALPLSPRRHHTIAVIGPNSDVTVTMIGNYAGVACGYTSPLQGITK
YAKTIHEKGCGDVACTDDKLFAGAVNAAHQAX

SignalP predicts non-secretion with a score of 0.047

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P153512 (120 Aa)

MFDGEPSAQPYGHLGPRDVCSPSHQELALEAARQGIVLLKNHGPALPLSPRRHHTIAVIGPNSDVTVTMIGNYAGVACGYTSPLQGITKY
AKTIHEKGCGDVACTDDKLFAGAVNAAHQA

SignalP predicts non-secretion with a score of 0.031

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	136	Glyco_hydro_3C	98
2	22187	Glyco_hydro_3C	47
5	56439	Glyco_hydro_3C	42
1.1	101526	Glycoside hydrolase family 3 C-terminal - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	86
2	118629	Glycoside hydrolase family 3 C-terminal - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	41
5	129131	Glycoside hydrolase family 3 C-terminal - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	37

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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