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Unigene SGN-U199859

Unigene Basic Information

Unigene ID:	SGN-U199859
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199859
mRNA sequence:	Length: 352 bp

>SGN-U199859 Capsicum annuum #1 (1 members)
CGAAGAAAGGGTAAAAAGGAGGAAGAAAGGGCCTTTCTTCCTCTTTTGTAGCATAAAGAGGCCCTTCAAGGAGTGTGAGAAGTTAGGAGG
AAGAGACGAGGGAGGTCAATGGATTTCGAAAGCAACAATTGGGTTTGGGAGGGGATGTATTACTATCCACGCCTTTTTGGTGGAATCATG
CTGACTGGAGCCTTGCTCGGGTTATCCACAAGCTATTTTGGCGGGATCAGTGTTCCTTCTCTGCTTTATCCTTTTCCTTATCTAAGTATC
TTCCATAAAAAAAAGCATGAGAAGAAGCGTGTTCGTGTATATATACATGGTCGTTCCGACCTTATGCACTATGGTCATGCCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E512901
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|37533878\|ref\|NP_921241.1\|	67.01	6.5e-11	55.56	237 bp (67.3%)	1
Description:	gi\|37533878\|ref\|NP_921241.1\| putative phospholipid cytidylyltransferase [Oryza sativa (japonica…
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34412 (118 Aa)

EERVKRRKKGPFFLFCSIKRPFKECEKLGGRDEGGQWISKATIGFGEGMYYYPRLFGGIMLTGALLGLSTSYFGGISVPSLLYPFPYLSI
FHKKKHEKKRVRVYIHGRSDLMHYGHAX

SignalP predicts non-secretion with a score of 0.114

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P153876 (91 Aa)

EVRRKRRGRSMDFESNNWVWEGMYYYPRLFGGIMLTGALLGLSTSYFGGISVPSLLYPFPYLSIFHKKKHEKKRVRVYIHGRSDLMHYGH
A

SignalP predicts non-secretion with a score of 0.205

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	626	Cytidylyltransf G3p_cytidyltrns Cyt_tran_rel	29
2	23029	Cytidylyltransf FAD_Synth G3p_cytidyltrns Cyt_tran_rel LPS_biosynth	16
5	57114	Cytidylyltransf FAD_Synth G3p_cytidyltrns Cyt_tran_rel LPS_biosynth	16
1.1	102074	Cytidyltransferase-related Cytidylyltransferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779)	23
2	119593	Cytidylyltransferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) Cytidyltransferase-related	14
5	129917	Cytidylyltransferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) Cytidyltransferase-related	14

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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