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Unigene SGN-U200018

Unigene Basic Information

Unigene ID:	SGN-U200018
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200018
mRNA sequence:	Length: 393 bp

>SGN-U200018 Capsicum annuum #1 (1 members)
TTGGATTGATGGGAAGTATGATGGATATGGGGTGGAAACGTGGTCGAAAGGGAGTCGGTATAGGGGGCAGTATAGGCAGGGATTGAGACA
TGGAGTTGGGATGTATAGGTCCTATACTGGGGATCTGTATGCTGGGGAATGGTGTAATGGACAGTGTCATGGATGTGGGGTTCATACTTG
TGAAGATGGAAGCAGTTATACTGGGGAGTTTAAGTGGGGTGTCAAACATGGATTGGGTCATTATCATTTCAGGTAACTACTTGGAGGCAC
TTGCCACTGTTTCTTTTTGGATTTCTAGTTATTAACTTGATGTTATTCTTCAAGTATGTGTGCGTGAGCACTTCGAATATTTGCATTATT
TTGTTGTCATTAGTGTTCTTTCCTATGTATGTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E489584
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|21928129\|gb\|AAM78092.1\|	172.2	1.4e-42	84.52	252 bp (64.1%)	2
Description:	gi\|21928129\|gb\|AAM78092.1\| AT4g17080/dl4570w [Arabidopsis thaliana] gi\|27764944\|gb\|AAO23593.1\| …
arabidopsis	blastx	At4g17080.1	172.2	6.7e-44	84.52	252 bp (64.1%)	2
Description:	At4g17080.1 68411.m02341 expressed protein
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P154041 (85 Aa)

LPEMIMTQSMFDTPLKLPSITASIFTSMNPTSMTLSITPFPSIQIPSIGPIHPNSMSQSLPILPPIPTPFRPRFHPISIILPINP

SignalP predicts non-secretion with a score of 0.114

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34566 (84 Aa)

WIDGKYDGYGVETWSKGSRYRGQYRQGLRHGVGMYRSYTGDLYAGEWCNGQCHGCGVHTCEDGSSYTGEFKWGVKHGLGHYHFR

SignalP predicts non-secretion with a score of 0.076

IPR003409 MORN motif

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	149	PIP5K	91
2	23481	MORN	12
5	58809	MORN	7
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	119931	MORN motif	11
5	131864	MORN motif	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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