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Unigene SGN-U200275

Unigene Basic Information

Unigene ID:	SGN-U200275
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200275
mRNA sequence:	Length: 424 bp

>SGN-U200275 Capsicum annuum #1 (1 members)
GAGTCACAAGGCAACTCTTCACTCTCCGTGCGCACACACACAAACAAAAAAATGGAAAGCATCGGAGTATTGATGGCGTGTCCAATGTCA
TCCTACTTAGAGCGAGAACTAGACAAGCGATTCAAGCTCTTCCGCTTCTGGAACTTCCCGCAGAAGTCTGAATTCCTGAATGAGCACGCT
GATTCCATCCGTGCTGTTGTCGGCAATGCCTTCGCCGGCGCTGACGCTGAGTTAATCGATTCCCTTCCGAAGCTCGAGATTGTTTCGAGT
TTCAGTGTTGGTTTAAATAAGATTGATTTGAATAAGTGTAAAGAGAAGGGGATTAGGGTTACGAATACTCCTGATGTTTTGACTGAGGAT
GTCGCTGATTTGGCTATTGGATTGATGCTGGCTGTACTTAGGAGGATTTGTGAGTGTGATCGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E507830
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At1g79870 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15220005\|ref\|NP_178105.1\|	200.7	3.4e-51	80.65	372 bp (87.7%)	1
Description:	oxidoreductase family protein [Arabidopsis thaliana] >gi12324598\|gb\|AAG52259.1\|AC011717_27 puta…
arabidopsis	blastx	At1g79870.1	200.7	2.1e-52	80.65	372 bp (87.7%)	1
Description:	At1g79870.1 68408.m08552 oxidoreductase family contains Pfam profile: PF02826 D-isomer specific…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0008152 metabolism
GO:0006564 L-serine biosynthesis
GO:0051287 NAD binding
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P154304 (141 Aa)

ESQGNSSLSVRTHTNKKMESIGVLMACPMSSYLERELDKRFKLFRFWNFPQKSEFLNEHADSIRAVVGNAFAGADAELIDSLPKLEIVSS
FSVGLNKIDLNKCKEKGIRVTNTPDVLTEDVADLAIGLMLAVLRRICECDR

SignalP predicts non-secretion with a score of 0.05

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34815 (141 Aa)

ESQGNSSLSGAHTQTKKWKASEIDGVSNVILLRARTRQAIQALPLLELPEKSEFLNEHADSIRAVVGNAFAGADAELIDSLPKLEIVSSF
SVGLNKIDLNKCKEKGIRVTNTPDVLTEDVADLAIGLMLAVLRRICECDRX

SignalP predicts non-secretion with a score of 0.043

IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	207	2-Hacid_DH_C	71
2	22528	2-Hacid_DH 2-Hacid_DH_C	26
5	56703	2-Hacid_DH	25
1.1	101571	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	70
2	118951	D-isomer specific 2-hydroxyacid dehydrogenase catalytic region - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	24
5	129372	D-isomer specific 2-hydroxyacid dehydrogenase catalytic region - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287)	23

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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