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Unigene SGN-U200330

Unigene Basic Information

Unigene ID:	SGN-U200330
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200330
mRNA sequence:	Length: 399 bp

>SGN-U200330 Capsicum annuum #1 (1 members)
TGGAGATCCTAATTGACATCAGGCTCGTCTGCACTTTACCTGTTCCTTTACGCTACCTTCTATTTCTTCACAAAGCTTGATATCACCAAG
CCTGTTTCTGCGATCTTGTATTTCGGTTACATGTTGATTGCTTCGTATGCATTTTTCGTTCTGACCGGGACCATTGGTTTCTATGCATGC
TTCTGGTTCACAAGACTCATTTACTCGTCTGTGAAGATCGACTGATGACTCCCACATTCTCCAGTTCACTGCCCTCACTGGTTTGTCTGT
CAACAAGAATGCTGTAGAAGATTACAATTGAATATTCAACTACTGTATCCCTTAAGAAATCTATTTGTCCCCCAATTTTTGAACATAAGG
TTATAATTTTATTACAGTACTTTAGTAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E511589
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18420880\|ref\|NP_568465.1\|	108.2	2.4e-23	90.54	222 bp (55.6%)	1
Description:	endomembrane protein 70, putative [Arabidopsis thaliana] >gi13430446\|gb\|AAK25845.1\|AF360135_1 p…
arabidopsis	blastx	At5g25100.1	108.2	1.2e-24	90.54	222 bp (55.6%)	1
Description:	At5g25100.1 68412.m02720 endomembrane protein 70, putative TM4 family;
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34869 (99 Aa)

GDPXLTSGSSALYLFLYATFYFFTKLDITKPVSAILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKMTDDSHILQFTALTGLSV
NKNAVEDYN

SignalP predicts secretion with a score of 0.457

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P154361 (90 Aa)

SSTAFLLTDKPVRAVNWRMWESSVDLHRRVNESCEPEACIETNGPGQNEKCIRSNQHVTEIQDRRNRLGDIKLCEEIEGSVKEQVKCRRA

SignalP predicts non-secretion with a score of 0.244

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	197	EMP70	75
2	22081	EMP70	74
5	56479	EMP70	38
1.1	101586	Nonaspanin (TM9SF) - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021)	67
2	118525	Nonaspanin (TM9SF) - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021)	65
5	129222	Nonaspanin (TM9SF) - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021)	30

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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