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Unigene SGN-U200364

Unigene Basic Information

Unigene ID:	SGN-U200364
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200364
mRNA sequence:	Length: 332 bp

>SGN-U200364 Capsicum annuum #1 (1 members)
CCTCGTGCCGAATCGGCACGAGGCACAGATGGATCTTCCCAATGTTTAAGCAATCATTTGTCATTTCCACCTGGGGGTCTTTCTGCATTG
CGCTTACCTGTGGTTACTAGCGGTGAGAGCAGCCTTGCTGCTAGATGTAGAAGAGTGTATGCCCATGCACATGACTATCATATCAATTCT
ATTCCAAATAACTGTGATGGGGAAACATTTATATCAGCTGATGATCTCCGTATTAACCTTCGGAACTTGCAAATAAGCAATCAAAGTTTC
AATATTGTTGATCTCAAGCCTGTAAATATGGAAGATCTAACTGAGGTGATAACTTCAGCTGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E511222
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|11094369\|gb\|AAG29595.1\|	160.2	5.8e-39	73.64	330 bp (99.4%)	1
Description:	gi\|11094369\|gb\|AAG29595.1\| Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha i…
arabidopsis	blastx	At1g17720.2	159.1	3.4e-40	77.23	303 bp (91.3%)	1
Description:	At1g17720.2 68408.m09120 type 2A protein serine/threonine phosphatase 55 kDa B regulatory subun…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0000159 protein phosphatase type 2A complex
GO:0008601 protein phosphatase type 2A regulator activity
GO:0007165 signal transduction

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34902 (102 Aa)

MDLPNXLSNHLSFPPGGLSALRLPVVTSGESSLAARCRRVYAHAHDYHINSIPNNCDGETFISADDLRINLRNLQISNQSFNIVDLKPVN
MEDLTEVITSAX

SignalP predicts non-secretion with a score of 0.197

IPR000009 Protein phosphatase 2A regulatory subunit PR55

Prediction based on longest six frame method

>SGN-P154397 (110 Aa)

PRAESARGTDGSSQCLSNHLSFPPGGLSALRLPVVTSGESSLAARCRRVYAHAHDYHINSIPNNCDGETFISADDLRINLRNLQISNQSF
NIVDLKPVNMEDLTEVITSA

SignalP predicts non-secretion with a score of 0.097

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	732	WD40 ADH_short Pp2A_PR55	26
2	22530	WD40 ADH_short Pp2A_PR55	26
5	56682	WD40 ADH_short Pp2A_PR55	26
1.1	102020	Protein phosphatase 2A regulatory subunit PR55 - Cellular Component: protein phosphatase type 2A complex (GO:0000159) - Biological Process: signal transduction (GO:0007165) - Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601) WD40-like WD-40 repeat	24
2	118987	WD-40 repeat Protein phosphatase 2A regulatory subunit PR55 - Cellular Component: protein phosphatase type 2A complex (GO:0000159) - Biological Process: signal transduction (GO:0007165) - Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601) WD40-like	23
5	129375	WD-40 repeat Protein phosphatase 2A regulatory subunit PR55 - Cellular Component: protein phosphatase type 2A complex (GO:0000159) - Biological Process: signal transduction (GO:0007165) - Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601) WD40-like	23

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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