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Unigene SGN-U200391

Unigene Basic Information

Unigene ID:	SGN-U200391
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200391
mRNA sequence:	Length: 245 bp

>SGN-U200391 Capsicum annuum #1 (1 members)
CGGAAAATAACAATAACGAGCAATTCTACAACCATTGTGGCGCACCCCTCGACAAAAGCTGAAATACAAGCCAGAATAATGCAGTTAAAG
AAGGATCTTGCAGAAACAGAGAATAAATATTTGTCAGAGAAGCTTTCACAAAGAATAGCAAAACTCGCTGGTGGTGTGGCCATATTGAAG
GTAGGAGCACATACTGAAACAGAACTGGAAGACCGCAAGCTGAGAATTGAGGATGCAAAAAGTGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E498249
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15239580\|ref\|NP_197383.1\|	125.2	2.3e-28	75.31	243 bp (99.2%)	1
Description:	EMB3007 (embryo defective 3007); ATP binding / protein binding [Arabidopsis thaliana] >gi623204…
arabidopsis	blastx	At5g18820.1	125.2	5.8e-30	75.31	243 bp (99.2%)	1
Description:	At5g18820.1 68412.m02050 chaperonin, putative similar to SWISS-PROT:P08926- RuBisCO subunit bin…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005515 protein binding
GO:0044267 cellular protein metabolism
GO:0005524 ATP binding

Protein prediction analysis (3)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34928 (81 Aa)

ENNNNEQFYNHCGAPLTKAEIQARIMQLKKDLAETENKYLSEKLSQRIAKLAGGVAILKVGAHTETELEDRKLRIEDAKSA

SignalP predicts non-secretion with a score of 0.022

IPR001844 Chaperonin Cpn60

Prediction based on longest six frame method

>SGN-P154425 (82 Aa)

RKITITSNSTTIVAHPSTKAEIQARIMQLKKDLAETENKYLSEKLSQRIAKLAGGVAILKVGAHTETELEDRKLRIEDAKSA

SignalP predicts non-secretion with a score of 0.043

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P154426 (82 Aa)

ALFASSILSLRSSSSVSVCAPTFNMATPPASFAILCESFSDKYLFSVSARSFFNCIILACISAFVEGCATMVVELLVIVIFR

SignalP predicts secretion with a score of 0.456

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	86	Cpn60/TCP-1	147
2	22074	Chaprnin_Cpn60 Cpn60/TCP-1	77
5	56329	Chaprnin_Cpn60 Cpn60/TCP-1	76
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118513	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	71
5	129005	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	70

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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