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Unigene SGN-U200425

Unigene Basic Information

Unigene ID:	SGN-U200425
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200425
mRNA sequence:	Length: 338 bp

>SGN-U200425 Capsicum annuum #1 (1 members)
TATAGGCAGCGTTACCAAGGGGTTGTCATTCCAGAGGCTTATGAACGTCTGATTCTCGACACAATAAGAGGGGATCAACAGCATTTTGTG
CGCAGAGATGAGCTCAAGGCGGCTTGGGAGATCTTTACCCCTCTTTTGCATAGAATTGACAATGGAGAGATGAAGCCAATTCCATACAAG
CCAGGCAGCAGAGGCCCTGCTGAAGCAGATGAGTTGTTGCAAAATGCCGGCTACGTTCAAACTCATGGCTATATATGGATCCCTCCCACT
CTATAAATTTGCCGAAGTATTGCCGATTACGTCCTATCATCCCTCTATAGATGAGTGTTCCTTTGTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E504595
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|585165\|sp\|P37830\|G6PD_SOLTU	190.3	5.2e-48	97.8	273 bp (80.8%)	1
Description:	gi\|585165\|sp\|P37830\|G6PD_SOLTU Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform (G6PD) …
arabidopsis	blastx	At5g40760.1	172.9	2.2e-44	86.81	273 bp (80.8%)	1
Description:	At5g40760.1 68412.m04454 glucose-6-phosphate dehydrogenase
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006006 glucose metabolism
GO:0004345 glucose-6-phosphate 1-dehydrogenase activity

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34962 (105 Aa)

YRQRYQGVVIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDNGEMKPIPYKPGSRGPAEADELLQNAGYFKLMAIYGSLPL
YKFAEVLPLRPIIPL

SignalP predicts non-secretion with a score of 0.058

IPR001282 Glucose-6-phosphate dehydrogenase

Prediction based on longest six frame method

>SGN-P154461 (91 Aa)

YRQRYQGVVIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDNGEMKPIPYKPGSRGPAEADELLQNAGYVQTHGYIWIPPT
L

SignalP predicts non-secretion with a score of 0.058

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	746	G6PD	25
2	22547	G6PD	25
5	56696	G6PD	25
1.1	102184	Glucose-6-phosphate dehydrogenase - Molecular Function: glucose-6-phosphate 1-dehydrogenase activity (GO:0004345) - Biological Process: glucose metabolism (GO:0006006)	19
2	119154	Glucose-6-phosphate dehydrogenase - Molecular Function: glucose-6-phosphate 1-dehydrogenase activity (GO:0004345) - Biological Process: glucose metabolism (GO:0006006)	19
5	129567	Glucose-6-phosphate dehydrogenase - Molecular Function: glucose-6-phosphate 1-dehydrogenase activity (GO:0004345) - Biological Process: glucose metabolism (GO:0006006)	18

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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