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Unigene SGN-U200454

Unigene Basic Information

Unigene ID:	SGN-U200454
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200454
mRNA sequence:	Length: 399 bp

>SGN-U200454 Capsicum annuum #1 (1 members)
CTCTTTCTCACTCTACTTTACCTTATACTAATATTTTCTCCGATGGCGCACGATAGCGATCTCCCATGCGACGGCGATGGCGTCTGTATG
GTCTGCAAAACGAAGCCATCCGAGAACGAATCCCTCGTCTGCAAGACCTGTGCTACTCCCTGGCACGTCAACTGCCTCTCTGCTCCTCCA
GATTCCATGGCCGATGCCGTCAACTGGGAGTGTCCTGACTGCTCATTGCCACCCGATGCCGCCGTTAAACAGAATGCTTCTGCTTCCTTG
TCTTCTGGAGACTTGATCTCTGCGATTCGGGCCATTGAATCCGCTTCCTCACTCACCGATCAGGACAAGGCCAAGCGACGACAAGAGCTC
TTGAGCGGAGGCGCCAAAGAAATTATTCTCGAGGGGATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E507903
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25372673\|pir\|\|E96612	114.4	3.3e-25	55.65	339 bp (85.0%)	1
Description:	gi\|25372673\|pir\|\|E96612 probable transcription factor F12K22.14 [imported] - Arabidopsis thalia…
arabidopsis	blastx	At1g57820.1	114.4	1.7e-26	55.65	339 bp (85.0%)	1
Description:	At1g57820.1 68408.m06013 zinc finger protein family low similarity to nuclear protein np95 [Mus…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34991 (115 Aa)

IAISHATAMASVGLQNEAIRERIPRLQDLATPWHVNCLSAPPDSMADAVNWECPDCSLPPDAAVKQNASASLSSGDLISAIRAIESASSL
TDQDKAKRRQELLSGGAKEIILEGI

SignalP predicts non-secretion with a score of 0.307

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P154491 (133 Aa)

LFLTLLYLILIFSPMAHDSDLPCDGDGVCMVCKTKPSENESLVCKTCATPWHVNCLSAPPDSMADAVNWECPDCSLPPDAAVKQNASASL
SSGDLISAIRAIESASSLTDQDKAKRRQELLSGGAKEIILEGI

SignalP predicts secretion with a score of 0.767

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	61	SET	197
2	23573	G9a Znf_ring	12
5	57649	G9a Znf_ring	12
1.1	101405	Nuclear protein SET	263
2	119964	SRA-YDG Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	11
5	130265	SRA-YDG Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	11

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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