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Unigene SGN-U200458

Unigene Basic Information

Unigene ID:	SGN-U200458
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200458
mRNA sequence:	Length: 286 bp

>SGN-U200458 Capsicum annuum #1 (1 members)
AGGCGTCAAAGTGGAAAGAGATGCAACTAAAAGGATACTCATTGATAAAACCCCTCCTATTTTGACAATTCATCTAAAGAGGTTCAGCCA
AGATTCTCGTGGACGCTTAAGTAAGCTGAGTGGCCATGTGAATTTCAGAGATACTATTGATATCACAACCTTTGTTGATCCCAGGTGCCT
GAAGAAGGAGGTTTACAAATACCGACTTGTGGGTGTCGTGGAACATTCAGGTACTATGAGAGGAGGTCACTATGTTGCATACGTCAGAGG
AGGCCCACCGATCGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E498219
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|17064774\|gb\|AAL32541.1\|	133.7	6.2e-31	67.78	270 bp (94.4%)	2
Description:	Unknown protein [Arabidopsis thaliana]
arabidopsis	blastx	At1g04860.1	133.7	1.6e-32	67.78	270 bp (94.4%)	2
Description:	At1g04860.1 68408.m00437 ubiquitin-specific protease 2 (UBP2) identical to GI:11993463
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0004221 ubiquitin thiolesterase activity
GO:0006511 ubiquitin-dependent protein catabolism
GO:0004197 cysteine-type endopeptidase activity

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34995 (95 Aa)

GVKVERDATKRILIDKTPPILTIHLKRFSQDSRGRLSKLSGHVNFRDTIDITTFVDPRCLKKEVYKYRLVGVVEHSGTMRGGHYVAYVRG
GPPIA

SignalP predicts non-secretion with a score of 0.046

IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2

Prediction based on longest six frame method

>SGN-P154495 (95 Aa)

GVKVERDATKRILIDKTPPILTIHLKRFSQDSRGRLSKLSGHVNFRDTIDITTFVDPRCLKKEVYKYRLVGVVEHSGTMRGGHYVAYVRG
GPPIA

SignalP predicts non-secretion with a score of 0.046

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	45	MATH	248
2	27150	Znf_UBP Peptidase_C19	4
5	61234	Znf_UBP Peptidase_C19	4
1.1	101414	TRAF-like	237
2	122014	Zinc finger UBP-type - Molecular Function: zinc ion binding (GO:0008270) Peptidase C19 ubiquitin carboxyl-terminal hydrolase 2 - Molecular Function: cysteine-type endopeptidase activity (GO:0004197) - Molecular Function: ubiquitin thiolesterase activity (GO:0004221) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	5
5	137844		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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