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Unigene SGN-U200673

Unigene Basic Information

Unigene ID:	SGN-U200673
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200673
mRNA sequence:	Length: 443 bp

>SGN-U200673 Capsicum annuum #1 (1 members)
CATATACTAGCTGAAAACACTCCAAAATTCTCTCCCAATTCAAAGAAACATGTATACACACAAAAGGGTCTCGATATTCTTTGCCTACAT
AACCCTTGTCTGCTTGGTTTCAAAGGGTATCTATGCATCTGAACCTGAATTCGGGTCGACCCGTGTTGTCTTTCAGACAAATTATGGAGA
TATTGAATTTGGTTTCTACCCTAGTGTTGCGCCAAAGACAGTACAACACATCTTCAAGCTCGTGCGCTTGGGAGGCTACAATACCAATCA
CTTTTTTCGGGTAGATAAGGGTTTCGTTGCCCAAGTGGCTGATGTTGTTGGGGGAAGGACTGCGCCTATGAATGAAGAACAAAAGGTGGA
ACCTGAAAAAACTGTTGTTGGTGAATTTAGTGAAGTGAAACATGTGACAGGAATCCTCTCAATGGGAAGGTATGATGATCCTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E509464
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At1g26940 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18396122\|ref\|NP_564267.1\|	187.2	3.7e-47	77.31	348 bp (78.6%)	2
Description:	gi\|18396122\|ref\|NP_564267.1\| expressed protein [Arabidopsis thaliana] gi\|21553981\|gb\|AAM63062.1…
arabidopsis	blastx	At1g26940.1	187.2	2.7e-48	77.31	348 bp (78.6%)	2
Description:	At1g26940.1 68408.m02976 expressed protein
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35204 (149 Aa)

HILAENTPKFSPNSKKHVYTQKGLDILCLQTLVCLVSKGIYASEPEFGSTRVVFQTNYGDIEFGFYPSVAAKDSTTHLQARAAWEATIPI
TFFXVDKGFVAQVADVVGGRTAPMNEEQKVEPEKTVVGEFSEVKHVTGILSMGRYDDPX

SignalP predicts non-secretion with a score of 0.206

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P154717 (144 Aa)

LKTLQNSLPIQRNMYTHKRVSIFFAYITLVCLVSKGIYASEPEFGSTRVVFQTNYGDIEFGFYPSVAPKTVQHIFKLVRLGGYNTNHFFR
VDKGFVAQVADVVGGRTAPMNEEQKVEPEKTVVGEFSEVKHVTGILSMGRYDDP

SignalP predicts secretion with a score of 0.487

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	101	CSA_PPIase	127
2	28224	CSA_PPIase	3
5	75180		1
1.1	101457	Peptidyl-prolyl cis-trans isomerase cyclophilin type - Biological Process: protein folding (GO:0006457)	137
2	124286	Peptidyl-prolyl cis-trans isomerase cyclophilin type - Biological Process: protein folding (GO:0006457)	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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