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Unigene SGN-U200781

Unigene Basic Information

Unigene ID:	SGN-U200781
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200781
mRNA sequence:	Length: 195 bp

>SGN-U200781 Capsicum annuum #1 (1 members)
CAGCGGCGGAGGCTGTCTTGGGTGGTGGCTTGATGGAGCTTTGGAGTTTTGATGATGTTAGTCGTCAACAACCTAGTTATAATGTAGTTT
GATTATTGTTTGTTTACATTGTTGTATGTTTTTATTTTTCGGTTTAGGAGAATGGGTTTCTTGTAATTTTCAATGTTTAAGCAATTGTGT
AAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
erflp1	ethylene-responsive factor-like protein 1

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E491142
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35311 (29 Aa)

AAEAVLGGGLMELWSFDDVSRQQPSYNVV

SignalP predicts non-secretion with a score of 0.13

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P154826 (37 Aa)

CSLIIVCLHCCMFLFFGLGEWVSCNFQCLSNCVKKKK

SignalP predicts secretion with a score of 0.804

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	18	TF_ERF	374
2	37760		1
5	75214		1
1.1	101383	Pathogenesis-related transcriptional factor and ERF - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	404

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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