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Unigene SGN-U200901

Unigene Basic Information

Unigene ID:	SGN-U200901
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200901
mRNA sequence:	Length: 377 bp

>SGN-U200901 Capsicum annuum #1 (1 members)
CTAGAAAGTTACCTTGAAGCAATTGAGCAACTGACAAACAATATTCGCTTCTTCAACAACAACAAAAGCTTCAAGAGTAGTGATGGAGTG
CTCAACAACGCAAATAATTTACTTGCTAAGGCTATTTCAAAGCTTGAAGATGAGTTTAAGCAGCTTCTGTCATCTTACAGCAAACCTGTT
GAACCAGAACGTCTTTTTGAATGCCTTCCAAATTCTATGCGACCATCATCTGGATCACCAGGAGATCAGGACTCTAACAGTAAGAGCCAT
TTGGCCAGCACCCATGGTGAGCATAATAATGGAACAGATAATACCGTCTATACCCCACCAACTCTTATCCCTCCAAGGATCCTGCCCCTA
TTGCCTGATCTATCCCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E509140
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15242972\|ref\|NP_200047.1\|	107.8	3.2e-23	53.27	321 bp (85.1%)	1
Description:	gi\|15242972\|ref\|NP_200047.1\| exocyst subunit EXO70 family [Arabidopsis thaliana] gi\|10177400\|db…
arabidopsis	blastx	At5g52340.1	107.8	1.4e-24	53.27	321 bp (85.1%)	1
Description:	At5g52340.1 68412.m05870 exocyst subunit EXO70 family strong similarity to unknown protein (emb…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P154948 (125 Aa)

LESYLEAIEQLTNNIRFFNNNKSFKSSDGVLNNANNLLAKAISKLEDEFKQLLSSYSKPVEPERLFECLPNSMRPSSGSPGDQDSNSKSH
LASTHGEHNNGTDNTVYTPPTLIPPRILPLLPDLS

SignalP predicts non-secretion with a score of 0.023

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35427 (126 Aa)

LESYLEAIEQLTNNIRFFNNNKSFKSSDGVLNNANNLLAKAISKLEDEFKQLLSSYSKPVEPERLFECLPNSMRPSSGSPGDQDSNSKSH
LASTHGEHNNGTDNTVYTPPTLIPPRILPLLPDLSX

SignalP predicts non-secretion with a score of 0.023

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	178	Exo70	79
2	22088	Exo70	72
5	62478		3
1.1	101544	Exo70 exocyst complex subunit - Cellular Component: exocyst (GO:0000145) - Biological Process: exocytosis (GO:0006887)	78
2	118517	Exo70 exocyst complex subunit - Cellular Component: exocyst (GO:0000145) - Biological Process: exocytosis (GO:0006887)	69
5	129050	Exo70 exocyst complex subunit - Cellular Component: exocyst (GO:0000145) - Biological Process: exocytosis (GO:0006887)	52

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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