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Unigene SGN-U201055

Unigene Basic Information

Unigene ID:	SGN-U201055
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201055
mRNA sequence:	Length: 450 bp

>SGN-U201055 Capsicum annuum #1 (1 members)
CAACAATGGCGGAGACCCCCTCAGTCCCTGCACCACCACCAACCGGGTCGGATCCTGATTACTGGTGCTACCAGTGTGAGGCACGGGTTG
CCGTCGAATCCCTACCCGATCTACCCGATCTGATTTGCAACAACTGCAAGAGTGGCTTCGTCGAGTCCGTACCCTCACGCGCTGTTTCTG
TCTCTCCTTCCGACGATCAGATCGATGAAGACCCTANTTTCGGCAATCAGTTCATCCAGGTTCTTCGTCTTATCGCTGAGGCTGCGCGTG
AAAGCGACGCGCCCCCTCCCCCTCCTTCTGACCACGCTGATGATGATTACCTCCGTGTCCAGCTGGACGGTTGGGGACACGACGAGGACG
ACGACGATCACGATGAAGATGAGGAGGAGCATAACGAACTCGAACTTAGAAATGGAGACGTCGGAGGACAAAATCGCCGGAATCGAATCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E501675
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P155103 (149 Aa)

TMAETPSVPAPPPTGSDPDYWCYQCEARVAVESLPDLPDLICNNCKSGFVESVPSRAVSVSPSDDQIDEDPXFGNQFIQVLRLIAEAARE
SDAPPPPPSDHADDDYLRVQLDGWGHDEDDDDHDEDEEEHNELELRNGDVGGQNRRNRI

SignalP predicts non-secretion with a score of 0.114

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35576 (147 Aa)

MAETPSVPAPPPTGSDPDSGATSVRHGLPSNPYPIYPSDLQQLQEWLRRVRTPRAVSVSPSDDQIDEDPXFGNQFIQVLRLIAEAARESD
APPPPPSDHADDDYLRVQLDGWGHDEDDDDHDEDEEEHNELNLEMETSEDKIAGIES

SignalP predicts non-secretion with a score of 0.088

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3314	ThiC	5
2	25422	Nucleoplasmin Znf_PHD Cyclotide Znf_ring	6
5	75302		1
1.1	101372	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	566
2	121939	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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