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Unigene SGN-U201299

Unigene Basic Information

Unigene ID:	SGN-U201299
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201299
mRNA sequence:	Length: 380 bp

>SGN-U201299 Capsicum annuum #1 (1 members)
ATCTCATCCTAAGCTTCCAGGACCGGGACAACAGCCAATCTTACTTCCAGAAACTTCATTCAAAAGAAGCTTTCGATGTGATTGAGGCTG
AGTTAGGATTTGCATATGATACCTTCTATACCAAAGCACCTGTTATTTATACTCCTCTAGGCTGCATCCTTCGTGTGGTTACTTTTTCTT
GCACCTCTTTTAGCTTGATTTCATTTTTTCTATGTAAGGAAAGACCTAAATACCACATACTTGACTTGATTCTCACTTACCTGCTGCTGG
TTGTGACCATTCTCCTGGAAATATATGCGTCGATTATTTCGCTGAAATCAGACTGGACAAAGAATTGGCTAAGCAAAGGCAAACAGGATG
GAATGTTTCAGCAGTTCCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E510167
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15242428\|ref\|NP_199366.1\|	71.63	2.5e-12	39.02	357 bp (93.9%)	3
Description:	unknown protein [Arabidopsis thaliana] >gi9758743\|dbj\|BAB09181.1\| unnamed protein product [Arab…
arabidopsis	blastx	At5g45530.1	71.63	1.1e-13	39.02	357 bp (93.9%)	3
Description:	At5g45530.1 68412.m05040 hypothetical protein similar to unknown protein (pir\|\|T04430)
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P155355 (126 Aa)

LILSFQDRDNSQSYFQKLHSKEAFDVIEAELGFAYDTFYTKAPVIYTPLGCILRVVTFSCTSFSLISFFLCKERPKYHILDLILTYLLLV
VTILLEIYASIISLKSDWTKNWLSKGKQDGMFQQFL

SignalP predicts non-secretion with a score of 0.031

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35811 (127 Aa)

LILSFQDRDNSQSYFQKLHSKEAFDVIEAELGFAYDTFYTKAPVIYTPLGCILRVVTFSCTSFSLISFFLCKERPKYHILDLILTYXAAG
CDHSPGNICVDYFAEIRLDKELAKQRQTGWNVSAVPX

SignalP predicts non-secretion with a score of 0.031

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1359	DUF594	14
2	23408	DUF594	13
5	75379		1
1.1	101942	Protein of unknown function DUF594	28
2	119742	Protein of unknown function DUF594	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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