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Unigene SGN-U201441

Unigene Basic Information

Unigene ID:	SGN-U201441
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201441
mRNA sequence:	Length: 456 bp

>SGN-U201441 Capsicum annuum #1 (1 members)
ACATGTGGATCCCCCGGGCTGCAGGTTTANACCGAATTCACGAAAATGCCATCATCAACCACCACCTCCTCCGCCGCTGCCACCACCTAC
ACGACCATCCCTATCTCCGGCAGTGACGTCATCAACCGGTCCATTCAAAATCTCTACACGTTCCTCTCCAAAACTCGACCGTGGCCGGAA
TTTCTCGCCGGAGCTAACGCTGTCGACATCCCGACATCCTTATCCGACGCCGGAATTCGTATCCGCCGGAACTTGAACTACTTCTCCGTC
AACTATGCTATTATCATCTCTGCTTTTGCAGCTGGTTCGCTCATCGGATCACCGGTTTTATTGATTTTCACCTGTTTGATATTTGCGTCG
TGGTTGATTCTTTTCTTCTTTCGGGAGGATCCTATGGTTGTTTTCGGGCATCAAGGATTGGTGTTTTGGTTTCTGTTATTCATGGAAGTT
TGAGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E494314
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15241155\|ref\|NP_200434.1\|	92.05	2.7e-18	46.73	318 bp (69.7%)	1
Description:	PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2) [Arabidopsis thaliana] >gi75170538\|sp\|Q9FH16.1\|PR1G2_ARA…
arabidopsis	blastx	At5g56230.1	92.05	1.2e-19	46.73	318 bp (69.7%)	1
Description:	At5g56230.1 68412.m06351 expressed protein similar to unknown protein (gb\|AAC83072.1)
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35948 (153 Aa)

MWIPRAAGLXRIHENAIIXPPPPPPLPPPTRPSLSPAVTSSTGPFKISTRSSPKLDRGRNFSPELTAVDIPTSLSDAGIRIRRNLNYFSV
NYAIIISAFAAGSAHRITGFIDFHLFDICVVVDSFLLSGGSYGCFRASRIGVLVSVIHGSLRX

SignalP predicts non-secretion with a score of 0.135

IPR000694 Proline-rich region

Prediction based on longest six frame method

>SGN-P155499 (150 Aa)

TCGSPGLQVXTEFTKMPSSTTTSSAAATTYTTIPISGSDVINRSIQNLYTFLSKTRPWPEFLAGANAVDIPTSLSDAGIRIRRNLNYFSV
NYAIIISAFAAGSLIGSPVLLIFTCLIFASWLILFFFREDPMVVFGHQGLVFWFLLFMEV

SignalP predicts non-secretion with a score of 0.146

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	219	PRA1	68
2	37926		1
5	75429		1
1.1	101472	Prenylated rab acceptor PRA1	112

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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