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Unigene SGN-U201542

Unigene Basic Information

Unigene ID:	SGN-U201542
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201542
mRNA sequence:	Length: 303 bp

>SGN-U201542 Capsicum annuum #1 (1 members)
TGGATCCCCCGGGCTGAGGTGGAGATTCAGACCGTGTGCAGACAGTTGTCGACAAGAGAGAGAGAAAGAACAACGGCCCGGCCAGGACTC
TGGAGAAGAAGATTCTAACCCACAAAAAAGAGAAGAGAATAATCCCTACTTATTCGAATCTCAAAGGTTCAGGTCTCCATTTAGAACAGG
TCAAGGTCATTTGCGCATCGTCGAGAAATCCACTCAAAGATCTGAACTTCTCCGAGGAATAGAAAAATACCGTGTTGCGGTCCTTGAATT
TGAGCCTCAATCTTTCATGGTGCCTAATCACTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E513624
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g22640 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|13183177\|gb\|AAK15089.1\|	85.5	1.9e-16	47.83	252 bp (83.2%)	2
Description:	gi\|13183177\|gb\|AAK15089.1\| 7S globulin [Sesamum indicum]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P155603 (100 Aa)

GSPGLRWRFRPCADSCRQEREKEQRPGQDSGEEDSNPQKREENNPYLFESQRFRSPFRTGQGHLRIVEKSTQRSELLRGIEKYRVAVLEF
EPQSFMVPNH

SignalP predicts non-secretion with a score of 0.086

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36046 (101 Aa)

WIPRAEVEIQTGADSCRQEREKEQRPGQDSGEEDSNPQKREENNPYLFESQRFRSPFRTGQGHLRIVEKSTQRSELLRGIEKYRVAVLEF
EPQSFMVPNHX

SignalP predicts non-secretion with a score of 0.028

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	169	Cupin	82
2	25081	Auxin_BP Cupin_sup SNase Cupin	7
5	75464		1
1.1	101559	Cupin RmlC-type Cupin 1 - Molecular Function: nutrient reservoir activity (GO:0045735)	73
2	119851	Cupin 1 - Molecular Function: nutrient reservoir activity (GO:0045735) Cupin RmlC-type Cupin region	12

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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