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Unigene SGN-U201621

Unigene Basic Information

Unigene ID:	SGN-U201621
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201621
mRNA sequence:	Length: 236 bp

>SGN-U201621 Capsicum annuum #1 (1 members)
GTACTCTATTTGATAATTGGGATCTATCAGAGTCTGGTGGAACAGAGCCTTTGGAGAATGACGAGCAGAGGCATGTTTCGTCAGACCAAG
ATCAAAGCTCGATGCTTGAGGTGATCTGCAACCAAAGAGACCGCTTCCGTGCTCCGTCGCGGGAGACTGAAGAGGAAATTACACAGCTGA
AGGAGAAGTCACGAGCACTGACCTCAGAACTTGATAAAACAAAAGCTGATAATGTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E506361
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|11994111\|dbj\|BAB01114.1\|	103.2	9.5e-22	67.53	231 bp (97.9%)	3
Description:	CASP protein-like; CCAAT displacement protein-like [Arabidopsis thaliana]
arabidopsis	blastx	At3g18480.1	103.2	2.4e-23	67.53	231 bp (97.9%)	3
Description:	At3g18480.1 68410.m02119 expressed protein contains Pfam profile: PF00430 ATP synthase B/B' CF(0)
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P155682 (78 Aa)

TLFDNWDLSESGGTEPLENDEQRHVSSDQDQSSMLEVICNQRDRFRAPSRETEEEITQLKEKSRALTSELDKTKADNV

SignalP predicts non-secretion with a score of 0.021

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36121 (78 Aa)

TLFDNWDLSESGGTEPLENDEQRHVSSDQDQSSMLEVICNQRDRFRAPSRETEEEITQLKEKSRALTSELDKTKADNV

SignalP predicts non-secretion with a score of 0.021

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	8	Myosin_tail	675
2	24799	Myosin_tail MAD DUF593 Involucrin_rpt KID_repeat Ribosomal_L29 Pox_A_type_inc SH3_bind_prot5	7
5	58830	Myosin_tail MAD DUF593 Involucrin_rpt KID_repeat Ribosomal_L29 Pox_A_type_inc SH3_bind_prot5	7
1.1	101367	Kinesin motor region - Molecular Function: microtubule motor activity (GO:0003777) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: microtubule associated complex (GO:0005875) - Biological Process: microtubule-based movement (GO:0007018)	846
2	121728	CASP C-terminal	6
5	131947	CASP C-terminal	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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