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Unigene SGN-U201673

Unigene Basic Information

Unigene ID:	SGN-U201673
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201673
mRNA sequence:	Length: 397 bp

>SGN-U201673 Capsicum annuum #1 (1 members)
GTGGGCTTCCTCAACAGCCAATGCACTAAGAATCTCCACAACCAACAATCTACTTGCCCCTTCCTTTTCTATCTCTAGATGCTTTTCAAC
AGTAATTGATGGGCTCAAGTATGCATCTTCACATGAATGGGTGAAACATGAAGGTGGAGTGGCCACAGTTGGCATCACTGATCATGCTCA
GGACCATCTTGGAGAAGTAGTGTTTGTGGATTTGCCAGAAACTGGTGGTTCTGTTTCCCAAGGAAGTGGCTTTGGAGCTGTTGAAAGTGT
CAAAGCCACCAGTGACATTAATTCTCCCATCTCCGGTGAGATTGTTGAGGTCAACACAAAGCTTTCACAAACGCCCGGCCTGGTAAATTC
AAGTCCATATGAAGATGGATGGATGATTAAAGCGAAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E501156
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|34420138\|gb\|AAQ67414.1\|	228	2.1e-59	82.84	396 bp (99.7%)	2
Description:	gi\|34420138\|gb\|AAQ67414.1\| glycine decarboxylase complex H-protein [Populus tremuloides]
arabidopsis	blastx	At1g32470.1	210.3	2.3e-55	74.63	396 bp (99.7%)	2
Description:	At1g32470.1 68408.m03628 glycine cleavage system H protein precursor -related similar to GB:Z37…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006546 glycine catabolism
GO:0005960 glycine cleavage complex

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P155735 (132 Aa)

WASSTANALRISTTNNLLAPSFSISRCFSTVIDGLKYASSHEWVKHEGGVATVGITDHAQDHLGEVVFVDLPETGGSVSQGSGFGAVESV
KATSDINSPISGEIVEVNTKLSQTPGLVNSSPYEDGWMIKAK

SignalP predicts non-secretion with a score of 0.225

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36171 (132 Aa)

WASSTANAQESPQPTIYLPLPFLSLDAFQXVIDGLKYASSHEWVKHEGGVATVGITDHAQDHLGEVVFVDLPETGGSVSQGSGFGAVESV
KATSDINSPISGEIVEVNTKLSQTPGLVNSSPYEDGWMIKAK

SignalP predicts non-secretion with a score of 0.196

IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site
IPR002930 Glycine cleavage H-protein

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1123	Lipoyl_BS GCV_H	17
2	22977	Lipoyl_BS GCV_H	17
5	57087	Lipoyl_BS GCV_H	17
1.1	102283	Single hybrid motif Glycine cleavage H-protein - Cellular Component: glycine cleavage complex (GO:0005960) - Biological Process: glycine catabolism (GO:0006546) 2-oxo acid dehydrogenase lipoyl-binding site	17
2	119312	Single hybrid motif 2-oxo acid dehydrogenase lipoyl-binding site Glycine cleavage H-protein - Cellular Component: glycine cleavage complex (GO:0005960) - Biological Process: glycine catabolism (GO:0006546)	17
5	129660	Single hybrid motif 2-oxo acid dehydrogenase lipoyl-binding site Glycine cleavage H-protein - Cellular Component: glycine cleavage complex (GO:0005960) - Biological Process: glycine catabolism (GO:0006546)	17

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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