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Unigene SGN-U201987

Unigene Basic Information

Unigene ID:	SGN-U201987
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201987
mRNA sequence:	Length: 448 bp

>SGN-U201987 Capsicum annuum #1 (1 members)
CTTAATTGCTCCCTCTACCACTTTCTCTCATCATTCCGCAGCTCCATCTTACTAGCACGACCATCTTCAGTTATATACTGTTCTCAGCAA
AATGCAGAACGAGAATCCGAATCCTGATGGCGTCAACACCAGCACCGTCGATGCAGCTACAGTTTTCTCTGATACAGCTTCACCACACTT
GGCTGACAATCCGTTTCTCTCACCTACCTCAACTCACCAGTTCGATTCCTCTGAATTCATCCCCAATTTCTACTCAACTTTCTCTCGCAG
CTCAAATTCCCCTTCCTTAACCTCCTTTGACGATATGGATGACCTCGTCTCCGATCGCCGCTTCAACCAAGCTAGCTACATTCTCGAGTA
CCAGCAAGTCTACAATCGGTACACTCTTTGCCTCGCACATCTGCAGGAATCTATCAAAGAAGTTGAAGCTCTTCACCAGGAGAATGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E509677
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P156056 (131 Aa)

HDHLQLYTVLSKMQNENPNPDGVNTSTVDAATVFSDTASPHLADNPFLSPTSTHQFDSSEFIPNFYSTFSRSSNSPSLTSFDDMDDLVSD
RRFNQASYILEYQQVYNRYTLCLAHLQESIKEVEALHQENE

SignalP predicts non-secretion with a score of 0.031

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36474 (119 Aa)

MQNENPNPDGVNTSTVDAATVFSDTASPHLADNPFLSPTSTHQFDSSEFIPNFYSTFSRSSNSPSLTSFDDMDDLVSDRRFNQASYILEY
QQVYNRYTLCLAHLQESIKEVEALHQENE

SignalP predicts non-secretion with a score of 0.038

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	77	KH_type_1 KH	159
2	38089		1
5	75643		1
1.1	101431	KH - Molecular Function: nucleic acid binding (GO:0003676) KH type 1 - Molecular Function: nucleic acid binding (GO:0003676)	188

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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