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Unigene SGN-U202231

Unigene Basic Information

Unigene ID:	SGN-U202231
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202231
mRNA sequence:	Length: 371 bp

>SGN-U202231 Capsicum annuum #1 (1 members)
AGAAAATATTGAAAGAATCAATGACAGGAGGATCAGAAGTGGTTGAAGCTACTTTATCTTGTGCTAAATGTACCAAGCCTGCTCATCTTC
AGTGTCCTAAGTGTGTGGAGTTGAACCTTCCTCGTGAAGGAGCTGCTTTCTGCACACAGGATTGTTTCAAGGCATCTTGGAGTTCTCACA
AGTCTGTCCACTTGAAGGCAACATTATCTTCCTCTGGCTACTGAAACTCCATCAGAACAAAATGCAGCCTCACCTAGTGATGGTTGGCTA
TATTGCTTGAGGAAAGGACAGGCTCGAACACCGAACCTTCCGCATTCTGACTGGACTGGGATGCTAAGGCCCTATCCAATATCAAGAAAG
CGTGTTGTACC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E508662
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At2g45240 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15225437\|ref\|NP_182049.1\|	106.3	5.2e-38	77.05	183 bp (49.3%)	3
Description:	MAP1A (METHIONINE AMINOPEPTIDASE 1A); aminopeptidase/ metalloexopeptidase [Arabidopsis thaliana…
arabidopsis	blastx	At2g45240.1	106.3	2.1e-39	77.05	183 bp (49.3%)	3
Description:	At2g45240.1 68409.m05087 methionine aminopeptidase -related
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P156307 (73 Aa)

KILKESMTGGSEVVEATLSCAKCTKPAHLQCPKCVELNLPREGAAFCTQDCFKASWSSHKSVHLKATLSSSGY

SignalP predicts non-secretion with a score of 0.052

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36703 (116 Aa)

MTGGSEVVEATLSCAKCTKPAHLQCPKCVELNLPREGAAFCTQDCFKASWSSHKSVHLKEHYLPLATETPSEQNAASPSDGWLYCLRKGQ
ARTPTFRILTGWDAKALSNIKKACCT

SignalP predicts non-secretion with a score of 0.068

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1280	Pept_M24_MAP Pept_M24A_MAP1 Pept_M24A_MAP2	15
2	23186	Pept_M24_MAP Pept_M24A_MAP1 Pept_M24A_MAP2	15
5	60169	Znf_MYND Pept_M24_MAP Pept_M24A_MAP1 Peptidase_M24 Znf_CCHC Znf_HIT Pept_M24A_MAP2	5
1.1	102056	Peptidase M24 - Biological Process: proteolysis (GO:0006508) - Molecular Function: metalloexopeptidase activity (GO:0008235)	23
2	119545	Peptidase M24 methionine aminopeptidase - Molecular Function: methionyl aminopeptidase activity (GO:0004239) - Biological Process: proteolysis (GO:0006508) Peptidase M24 - Biological Process: proteolysis (GO:0006508) - Molecular Function: metalloexopeptidase activity (GO:0008235) Peptidase M24A methionine aminopeptidase subfamily 1 - Molecular Function: methionyl aminopeptidase activity (GO:0004239) - Biological Process: proteolysis (GO:0006508)	14
5	132574	Peptidase M24 methionine aminopeptidase - Molecular Function: methionyl aminopeptidase activity (GO:0004239) - Biological Process: proteolysis (GO:0006508) Peptidase M24 - Biological Process: proteolysis (GO:0006508) - Molecular Function: metalloexopeptidase activity (GO:0008235) Peptidase M24A methionine aminopeptidase subfamily 1 - Molecular Function: methionyl aminopeptidase activity (GO:0004239) - Biological Process: proteolysis (GO:0006508)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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