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Unigene SGN-U202350

Unigene Basic Information

Unigene ID:	SGN-U202350
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202350
mRNA sequence:	Length: 444 bp

>SGN-U202350 Capsicum annuum #1 (1 members)
CTGGATAAGTGCTATGGCGCCTTTAACATCTGTGATTTTGGGAAGTGTTCTTGTTTATTTCACCCATGCTGGAAAAAATGGTGTTCAAGT
GATTGGGCACTTGAAAAGGGGGATAAATCCACCATCGTATTCTGAATTGCCATTTAGCTCACAATATCTTTCAATTGCCATTAAGACTGG
AATCGTCACCAGTGTCATTGCCTTGGCTGAAGGAATAGCAGTTGGAAGGAGTCTTGCCATAATTGAAAACTATGACATTGATGGAAACAA
AGAAATGATTGCCTTTGGGCTTATGAACATTGCTGGTTCTTGCACCTCTTGCTACTTAACCACAGGACCATTCTCCGCGAACCGCGGTGA
ATTTCAATGCAGGATGTAACACAGCAGTGCTCCACATAGTAATGGCCAACAGCAGTGATGATAACATTGTTGTTCCTCACACCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E512222
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|11279065\|pir\|\|T48901	178.3	1.2e-48	73.91	345 bp (77.7%)	2
Description:	gi\|11279065\|pir\|\|T48901 sulfate transporter ATST1 [imported] - Arabidopsis thaliana gi\|2285885\|…
arabidopsis	blastx	At3g51895.1	177.9	1.1e-49	73.04	345 bp (77.7%)	2
Description:	At3g51895.1 68410.m05275 sulfate transporter ATST1
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36817 (149 Aa)

WISAMAPLTSVILGSVLVYFTHAGKNGVQVIGHLKRGINPPSYSELPFSSQYLSIAIKTGIVTSVIALAEGIAVGRSLAIIENYDIDGNK
EMIALWAYEHCWFLHLLLLNHRTILREPXVNFNAGCNTAVLHIVMANSSDDNIVVPHTX

SignalP predicts secretion with a score of 0.72

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P156429 (125 Aa)

WISAMAPLTSVILGSVLVYFTHAGKNGVQVIGHLKRGINPPSYSELPFSSQYLSIAIKTGIVTSVIALAEGIAVGRSLAIIENYDIDGNK
EMIAFGLMNIAGSCTSCYLTTGPFSANRGEFQCRM

SignalP predicts secretion with a score of 0.72

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	278	STAS Xant/urac/vitC Sulph_transpt	57
2	22140	STAS Xant/urac/vitC Sulph_transpt	56
5	56382	STAS Xant/urac/vitC Sulph_transpt	54
1.1	101641	Sulfate transporter/antisigma-factor antagonist STAS Sulphate anion transporter - Molecular Function: sulfate porter activity (GO:0008271) - Biological Process: sulfate transport (GO:0008272) - Cellular Component: membrane (GO:0016020) Sulphate transporter - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021)	53
2	118564	Sulfate transporter/antisigma-factor antagonist STAS Sulphate anion transporter - Molecular Function: sulfate porter activity (GO:0008271) - Biological Process: sulfate transport (GO:0008272) - Cellular Component: membrane (GO:0016020) Sulphate transporter - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021)	53
5	129055	Sulfate transporter/antisigma-factor antagonist STAS Sulphate anion transporter - Molecular Function: sulfate porter activity (GO:0008271) - Biological Process: sulfate transport (GO:0008272) - Cellular Component: membrane (GO:0016020) Sulphate transporter - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021)	51

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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