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Unigene SGN-U202453

Unigene Basic Information

Unigene ID:	SGN-U202453
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202453
mRNA sequence:	Length: 154 bp

>SGN-U202453 Capsicum annuum #1 (1 members)
GGAATTTTGGCAATCCTAAAGAACANATGGAAATGCTTACATGGCCAGAAAAAGTCAAATTTGCGAATTGGGACCTCTTGCCAGCAATGC
TTGGTGGGCAATCTTATGTTGAAGCTCAAGAAGGGATAAGTGTTAAGGACTGGATGAGAAAACA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pds1	phytoene desaturase 1	phytoene desaturase

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E510117
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|117513\|sp\|P80093\|CRTI_CAPAN	74.33	5.2e-13	90.24	123 bp (79.9%)	3
Description:	gi\|117513\|sp\|P80093\|CRTI_CAPAN Phytoene dehydrogenase, chloroplast precursor (Phytoene desatura…
arabidopsis	blastx	At4g14210.1	67.4	1.6e-12	75.61	123 bp (79.9%)	3
Description:	At4g14210.1 68411.m01986 phytoene dehydrogenase precursor [phytoene desaturase] (PDS) identical…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P156533 (51 Aa)

FSHPVLNTYPFLSFNIRLPTKHCWQEVPIRKFDFFWPCKHFHXFFRIAKIP

SignalP predicts non-secretion with a score of 0.207

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36918 (51 Aa)

NFGNPKEXMEMLTWPEKVKFANWDLLPAMLGGQSYVEAQEGISVKDWMRKX

SignalP predicts non-secretion with a score of 0.096

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	210	FAD_pyr_redox Amino_oxidase	70
2	23971	GidA_sub FAD_pyr_redox NAD_BS Proto_IX_ox Amino_oxidase Malic_oxred Amineoxid_fl Moxy_FAD_binding Gid UDP-GALP_mutase	10
5	58033	GidA_sub FAD_pyr_redox NAD_BS Proto_IX_ox Amino_oxidase Malic_oxred Amineoxid_fl Moxy_FAD_binding Gid UDP-GALP_mutase	10
1.1	101442	Amine oxidase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) NAD-binding site	155
2	119348	NAD-binding site Amine oxidase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	17
5	130759	NAD-binding site Flavin-containing amine oxidase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Amine oxidase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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