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Unigene SGN-U202498

Unigene Basic Information

Unigene ID:	SGN-U202498
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202498
mRNA sequence:	Length: 342 bp

>SGN-U202498 Capsicum annuum #1 (1 members)
GTCTAAAGTTCTGGGCCAAAAGACGTGGTGTTTATTCCAATGTAAGTGGATTTCTTGGTGGAGTCAATTGGGCTCTTTTGGCTGCTCGCA
TTTGCCAGTTGTATCCAAATGCAATCCCTAGTATGCTTGTTCCTAGGTTCTTCCGTGTTTATACACAATGGCGTCGGCCAAATCCTGTAA
TGTTATGTCCAATAGAAGAGGATGAACTTGGGTTTCTTGTTTGGGATCCGCGCACGAATGCTAAAGANAGAACTCATCATATGCCAATCA
TCACTCCTGCCTACCCCTGCATGAATTCTACCTACAACGTCTCTCCAAGCACTCTTCGAGTAATGATGGACC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E511190
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30689513\|ref\|NP_849562.1\|	199.9	6.5e-51	82.3	339 bp (99.1%)	3
Description:	gi\|30689513\|ref\|NP_849562.1\| poly(A) polymerase -related [Arabidopsis thaliana] gi\|30689519\|ref…
arabidopsis	blastx	At4g32850.3	199.9	1.7e-52	82.3	339 bp (99.1%)	3
Description:	At4g32850.3 68411.m05389 poly(A) polymerase -related polynucleotide adenylyltransferase (EC 2.7…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0004652 polynucleotide adenylyltransferase activity
GO:0003676 nucleic acid binding
GO:0006350 transcription

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P156578 (113 Aa)

LKFWAKRRGVYSNVSGFLGGVNWALLAARICQLYPNAIPSMLVPRFFRVYTQWRRPNPVMLCPIEEDELGFLVWDPRTNAKXRTHHMPII
TPAYPCMNSTYNVSPSTLRVMMD

SignalP predicts non-secretion with a score of 0.321

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36961 (114 Aa)

LKFWAKRRGVYSNVSGFLGGVNWALLAARICQLYPNAIPSMLVPRFFRVYTQWRRPNPVMLCPIEEDELGFLVWDPRTNAKXRTHHMPII
TPAYPCMNSTYNVSPSTLRVMMDX

SignalP predicts non-secretion with a score of 0.321

IPR001201 PAP/25A core
IPR007012 Poly(A) polymerase, central region

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	532	PAP_RNA_bind PAP_centr PAP_25A_core	34
2	22471	PAP_RNA_bind PAP_centr PAP_25A_core	28
5	56632	PAP_RNA_bind PAP_centr PAP_25A_core	28
1.1	101903	Poly(A) polymerase central region - Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652) - Biological Process: transcription (GO:0006350) PAP/25A core - Molecular Function: nucleic acid binding (GO:0003676) Poly(A) polymerase C-terminal-like Poly(A) polymerase RNA-binding region - Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652) - Biological Process: transcription (GO:0006350)	29
2	119025	Poly(A) polymerase RNA-binding region - Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652) - Biological Process: transcription (GO:0006350) Poly(A) polymerase central region - Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652) - Biological Process: transcription (GO:0006350) PAP/25A core - Molecular Function: nucleic acid binding (GO:0003676) Poly(A) polymerase C-terminal-like	22
5	129472	Poly(A) polymerase RNA-binding region - Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652) - Biological Process: transcription (GO:0006350) Poly(A) polymerase central region - Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652) - Biological Process: transcription (GO:0006350) PAP/25A core - Molecular Function: nucleic acid binding (GO:0003676) Poly(A) polymerase C-terminal-like	20

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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