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Unigene SGN-U202931

Unigene Basic Information

Unigene ID:	SGN-U202931
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202931
mRNA sequence:	Length: 426 bp

>SGN-U202931 Capsicum annuum #1 (1 members)
CGGAGCCCTCGTGGCAGGAGGGATCGAAGTCCATCTAGGGATAGTAGTGAAGAGAGACGTGCAAGAATTGAGCAGTGGAACAGGGAAAAA
GAAGAGGCAGAACATACCAACAGGACTAATGCAGATGATACTAATTACAACAACAAAAATTATGAGATGGGATATGCACAAAATGGAGAT
GGATATAATGATCAGCAGCCACCACGACAGGATGGATATGGATACTAATGAGTGTATCCTATAGAGGTTTGTTTCCTTTCCTTTATTCTT
GATGTTTCAATTTTCTCCGGAAGTCATTGTCTTCTAAGGAAGGTCACTTGCCCTGAGATATACCTTACTACCATCTTCCACTGTGCAGGT
GGTGCAGGTTTTCAATCTGTGCTATCCAACGTGAACTTTCAACCCTTTATTATGCCTTCGTGACTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E510267
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P37381 (143 Aa)

RSPRGRRDRSPSRDSSEERRARIEQWNREKEEAEHTNRTNADDTNYNNKNYEMGYAQNGDGYNDQQPPDRMDMDTNEXYPIEVCFLSFIL
DVSIFSGSHCLLRKVTCPEIYLTTIFHCAGGAGFQSXAIQRELSTLYYAFVTX

SignalP predicts non-secretion with a score of 0.025

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P157017 (92 Aa)

NIKNKGKETNLYRIHSLVSISILSWWLLIIISISILCISHLIIFVVVISIICISPVGMFCLFFFPVPLLNSCTSLFTTIPRWTSIPPATR
AP

SignalP predicts non-secretion with a score of 0.34

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	445	RNA_rec_mot	39
2	29935		2
5	75955		1
1.1	101996	Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270) U2 auxiliary factor small subunit - Molecular Function: RNA binding (GO:0003723) - Cellular Component: nucleus (GO:0005634)	25
2	126949		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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