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Unigene SGN-U202940

Unigene Basic Information

Unigene ID:	SGN-U202940
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202940
mRNA sequence:	Length: 253 bp

>SGN-U202940 Capsicum annuum #1 (1 members)
CGGGTTATGAATGGCATCTACCTTCATTGGAAACTCAAGATCCATTGAAGAGATGTTTAGGCGTGTGAGTGAGCAGTCCAGTGCTATGTC
CAGGACAAAAGCTTTCTTGCTTTGGTAAACTGGTGAAGGAATGGACGAGATGGAGTGCCATCGAGGAAGAAAGTAACATGAAAGATTTGG
TATCTGGATATGAGCAGAACCAGAATGCCACTGCTGATGAGGAGGGAGAATATTATGAAGACTAAAAAGAGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E497979
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|26449623\|dbj\|BAC41937.1\|	76.64	3.2e-17	79.17	144 bp (56.9%)	2
Description:	putative tubulin beta-1 chain [Arabidopsis thaliana] >gi28951025\|gb\|AAO63436.1\| At1g75780 [Arab…
arabidopsis	blastx	At2g29550.1	75.48	1.8e-18	81.25	144 bp (56.9%)	2
Description:	At2g29550.1 68409.m03249 tubulin beta-7 chain (TUB7) identical to GB:M84704 SP\|P29515 Tubulin b…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0007018 microtubule-based movement
GO:0005198 structural molecule activity
GO:0005874 microtubule

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P37390 (77 Aa)

MASTFIGNSRSIEEMFRRVSEQSSAMSRTKAFFFGKLVKEWTRWSAIEEESNMKDLVSGYEQNQNATADEEGEYYED

SignalP predicts non-secretion with a score of 0.036

IPR002453 Beta tubulin

Prediction based on longest six frame method

>SGN-P157026 (84 Aa)

PLFSLHNILPPHQQWHSGSAHIQIPNLSCYFLPRWHSISSIPSPVYQSKKAFVLDIALDCSLTRLNISSMDLEFPMKVDAIHNP

SignalP predicts non-secretion with a score of 0.086

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	68	Tubulin_FtsZ Tubulin Tub_FtsZ_C	172
2	22017	Tubulin_FtsZ Tubulin Tub_FtsZ_C	143
5	56318	Tubulin_FtsZ Tubulin Tub_FtsZ_C	83
1.1	101452	Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	140
2	118444	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	138
5	128984	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	81

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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