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Unigene SGN-U202955

Unigene Basic Information

Unigene ID:	SGN-U202955
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202955
mRNA sequence:	Length: 305 bp

>SGN-U202955 Capsicum annuum #1 (1 members)
CAAGATTGGTCAGTTGTGGACATAGACAGTTCTGATAAAAAGAACGAACTTGCTGTAGTGGAATACATTGATGACATCTATGCTTACTAT
AAGAAGGCTGAGATCGTTGGCTGCGTCCCTCCAAACTATATGGAGCAGCAATTTGATATTAATGAGAGGATGAGAGGCATCCTCATTGAC
TGGCTGATTGACGTACACTATAAGTTTGAACTGATGGAGGAGACCTTGTATTTGACCGTGAATCTCATCCATAGATTCCTGCCAGTTCAG
TCAGTGATTAGGAAAAAACTTCAGCTTGTCGCAAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E506690
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25294186\|pir\|\|F96790	151	3.6e-36	76.53	291 bp (95.4%)	1
Description:	gi\|25294186\|pir\|\|F96790 hypothetical protein F15M4.19 [imported] - Arabidopsis thaliana gi\|6554…
arabidopsis	blastx	At1g76310.1	151	9.4e-38	76.53	291 bp (95.4%)	1
Description:	At1g76310.1 68408.m08140 cyclin, putative similar to B-like cyclin GI:780267 from (Medicago sat…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0000074 regulation of cell cycle

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P157043 (101 Aa)

QDWSVVDIDSSDKKNELAVVEYIDDIYAYYKKAEIVGCVPPNYMEQQFDINERMRGILIDWLIDVHYKFELMEETLYLTVNLIHRFLPVQ
SVIRKKLQLVA

SignalP predicts non-secretion with a score of 0.016

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P37405 (102 Aa)

QDWSVVDIDSSDKKNELAVVEYIDDIYAYYKKAEIVGCVPPNYMEQQFDINERMRGILIDWLIDVHYKFELMEETLYLTVNLIHRFLPVQ
SVIRKKLQLVAX

SignalP predicts non-secretion with a score of 0.016

IPR006671 Cyclin, N-terminal

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	168	Cyclin_N	83
2	22286	Cyclin_N	38
5	57370	Cyclin_N	14
1.1	101522	Cyclin N-terminal - Biological Process: regulation of progression through cell cycle (GO:0000074) Cyclin-like	88
2	118599	Cyclin N-terminal - Biological Process: regulation of progression through cell cycle (GO:0000074) Cyclin-like	45
5	129793	Cyclin N-terminal - Biological Process: regulation of progression through cell cycle (GO:0000074) Cyclin-like Cyclin-related	15

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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