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Unigene SGN-U203341

Unigene Basic Information

Unigene ID:	SGN-U203341
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	203341
mRNA sequence:	Length: 356 bp

>SGN-U203341 Capsicum annuum #1 (1 members)
CCGGCCTTCTTATTTTCATGCTTTATCATTCCGCACAATTAATTTCTAATTTCTTGATTCCTATACACCCGTAATTTCTCCTTCCCAATC
CATTCTTCCTTCTCTGTTTTTGTACGACAAAAACAACATTCTCTCATCTCTTTCGGTTCTAAGAACGTCGGCGTTTTTCTTCACGGATTT
CATGGAAATCAAGGATGATGATTCTGGCTCCAGTAGTTCATTTGACGGCATTTTACCACCCCGCTTAGGTAGGCCACGCAGTTCATCTCC
ATCTGTAATTGTGATTGGTGGAGGTATCTCGGGGATACCTGCTGCACGTTTCCTTCAGAATGCATCTTTCACGGTTCTCTTGTTGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E504759
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P37778 (118 Aa)

GLLIFMLYHSAQLISNFLIPIHPNFSFPIHSSFSVFDDKNNILSSLSVLRTSAFFFTDFMEIKDDDSGSSSSFDGILPPRLGRPRSSSPS
VIVIGGGISGIPAARFLQNASFTVLLLX

SignalP predicts non-secretion with a score of 0.377

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P157438 (102 Aa)

FLDSYTPVISPSQSILPSLFLYDKNNILSSLSVLRTSAFFFTDFMEIKDDDSGSSSSFDGILPPRLGRPRSSSPSVIVIGGGISGIPAAR
FLQNASFTVLLL

SignalP predicts non-secretion with a score of 0.122

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	210	FAD_pyr_redox Amino_oxidase	70
2	22314	GidA_sub FAD_pyr_redox Amino_oxidase	35
5	76101		1
1.1	101442	Amine oxidase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) NAD-binding site	155

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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