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Unigene SGN-U203874

Unigene Basic Information

Unigene ID:	SGN-U203874
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	203874
mRNA sequence:	Length: 320 bp

>SGN-U203874 Capsicum annuum #1 (1 members)
GCGTGTTGTTCCCTACCAAATCCCAGTTACCTTCTTCAGTGTAATACTTCATCGCAAAACCTCTAGGGTCTCTCACCGCATCCGCAGAAC
CTCTTTCACCAGCCACAGTAGAAAATCTGAAAAAGCATTCGGTTTTTTTGCCCACTTTAGAGAAAATTTTCGCTTTAGTGTATTTAGTGA
TGTCTTTAGTCACGGTGAAAGTGCCATAAGCTCCGCTTCCTTTAGCATGCACTACCCTTTCAGGGATCCTTTCTCGATCAAACGCCGCTA
ACTTTTCCAAAAACCAAGTGCTTTGTAATAAAACAGGACCTCTAGGACCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E491835
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15645494\|ref\|NP_207669.1\|	221.1	2.8e-57	100	318 bp (99.4%)	-2
Description:	gi\|15645494\|ref\|NP_207669.1\| catalase [Helicobacter pylori 26695] gi\|2493545\|sp\|P77872\|CATA_HEL…
arabidopsis	blastx	At1g20630.1	130.2	1.7e-31	61.9	315 bp (98.4%)	-2
Description:	At1g20630.1 68408.m02329 catalase 1 identical to catalase 1 GI:2511725 from [Arabidopsis thaliana]
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0004096 catalase activity
GO:0006979 response to oxidative stress
GO:0006118 electron transport

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38293 (107 Aa)

GPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAM
KYYTEEGNWDLVGNNTX

SignalP predicts non-secretion with a score of 0.365

IPR011614 Catalase, N-terminal
IPR002226 Catalase

Prediction based on longest six frame method

>SGN-P157984 (106 Aa)

GPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAM
KYYTEEGNWDLVGNNT

SignalP predicts non-secretion with a score of 0.365

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	549	Catalase	33
2	22366	Catalase	33
5	56542	Catalase	33
1.1	101827	Catalase - Molecular Function: catalase activity (GO:0004096) - Biological Process: electron transport (GO:0006118) - Biological Process: response to oxidative stress (GO:0006979) Catalase N-terminal - Molecular Function: catalase activity (GO:0004096) - Biological Process: electron transport (GO:0006118) - Biological Process: response to oxidative stress (GO:0006979)	34
2	118745	Catalase N-terminal - Molecular Function: catalase activity (GO:0004096) - Biological Process: electron transport (GO:0006118) - Biological Process: response to oxidative stress (GO:0006979) Catalase - Molecular Function: catalase activity (GO:0004096) - Biological Process: electron transport (GO:0006118) - Biological Process: response to oxidative stress (GO:0006979)	32
5	129192	Catalase N-terminal - Molecular Function: catalase activity (GO:0004096) - Biological Process: electron transport (GO:0006118) - Biological Process: response to oxidative stress (GO:0006979) Catalase - Molecular Function: catalase activity (GO:0004096) - Biological Process: electron transport (GO:0006118) - Biological Process: response to oxidative stress (GO:0006979)	32

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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