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Unigene SGN-U204290

Unigene Basic Information

Unigene ID:	SGN-U204290
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204290
mRNA sequence:	Length: 296 bp

>SGN-U204290 Capsicum annuum #1 (1 members)
CAAACTAACTTGGTTCCATACCCAAGGATTCATTTCATGCTTTCTTCATACGCCCCTGTGATCTCTGCCTGAAAAGGCGTATCACGAGCA
GCTCTCTGTTGCAGAAATTACCAACACTGCTTTCGAGCCATCTTCTATGATGGTCAAGTGTGACCCGCGTCACGGGAAATACATGGCTTG
CTGTTTGATGTACAGAGGTGATGTTGTGCCCAAGGATGTTAACGCTGCTGTCCCCACAACTAAGACCAAGCGGACCATTCACTTTGTGGA
CTGCTGCCCAACTGGGTCCAACTGTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E494900
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 7 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|29124983\|gb\|AAO63781.1\|	144.1	6.6e-43	89.33	225 bp (76.0%)	2
Description:	gi\|29124983\|gb\|AAO63781.1\| alpha-tubulin 1 [Populus tremuloides]
arabidopsis	blastx	At4g14960.2	141	1.4e-43	86.67	225 bp (76.0%)	2
Description:	At4g14960.2 68411.m02081 tubulin alpha-6 chain (TUA6) nearly identical to SP\|P29511 Tubulin alp…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0007018 microtubule-based movement
GO:0005525 GTP binding
GO:0043234 protein complex
GO:0051258 protein polymerization
GO:0005874 microtubule
GO:0005198 structural molecule activity
GO:0003924 GTPase activity

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P158415 (86 Aa)

TVGPSWAAVHKVNGPLGLSCGDSSVNILGHNITSVHQTASHVFPVTRVTLDHHRRWLESSVGNFCNRELLVIRLFRQRSQGRMKKA

SignalP predicts non-secretion with a score of 0.134

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38698 (98 Aa)

QTNLVPYPRIHFMLSSYAPGSLPEKAYHEQLSVAEITNTAFEPSSMMVKCDPVTGNTWLAXLMYRGDVVPKDVNAAVPTTRPSGPFTLWT
AAQLGPTV

SignalP predicts non-secretion with a score of 0.155

IPR008280 Tubulin/FtsZ, C-terminal
IPR002452 Alpha tubulin

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	68	Tubulin_FtsZ Tubulin Tub_FtsZ_C	172
2	22017	Tubulin_FtsZ Tubulin Tub_FtsZ_C	143
5	56367	Alpha_tubulin Tubulin_FtsZ Tubulin AroFGH Tub_FtsZ_C	58
1.1	101452	Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	140
2	118444	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	138
5	129035	Alpha tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	55

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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