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Unigene SGN-U204379

Unigene Basic Information

Unigene ID:	SGN-U204379
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204379
mRNA sequence:	Length: 239 bp

>SGN-U204379 Capsicum annuum #1 (1 members)
AAATGCTAAAACTGCTGAAGTGGTTATTAGACATTTTGATGGATGCAAGGCTGATCTTGTTGTCTGTGATGGTGCACCTGATGTAACGGG
ACTTCATGACATGGATGAATTTGTTCAATCCCAGCTTATATTGGCGGGCCTAACCATAGTCACTCACATACTAAAAGGAGGCGGAAAGTT
CATAGCANAAATTTCTCGAGGAAAAGAAACAAGTCTCCTTTACTGTCAGCTAAAACTGT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E506792
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g01230 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30679168\|ref\|NP_851026.1\|	151	4e-36	93.67	237 bp (99.2%)	2
Description:	FtsJ-like methyltransferase family protein [Arabidopsis thaliana] >gi26983822\|gb\|AAN86163.1\| pu…
arabidopsis	blastx	At5g01230.1	151	1e-37	93.67	237 bp (99.2%)	2
Description:	At5g01230.1 68412.m00027 cell division - like protein JM23 protein, Homo sapiens, EMBL:AF063015
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38787 (80 Aa)

NAKTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFXSIPAYIGGPNHSHSHTKRRRKVHSXNFSRKRNKSPLLSAKTV

SignalP predicts non-secretion with a score of 0.074

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158504 (79 Aa)

NAKTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKGGGKFIAXISRGKETSLLYCQLKL

SignalP predicts non-secretion with a score of 0.072

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	927	RrmJ_FtsJ RrmJ	20
2	24734	RrmJ_FtsJ RrmJ Prok_nadp_idh	7
5	58761	RrmJ_FtsJ RrmJ Prok_nadp_idh	7
1.1	102321	Ribosomal RNA methyltransferase RrmJ/FtsJ	17
2	122636	Ribosomal RNA methyltransferase RrmJ/FtsJ	5
5	132825	Ribosomal RNA methyltransferase RrmJ/FtsJ	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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