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Unigene SGN-U204480

Unigene Basic Information

Unigene ID:	SGN-U204480
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204480
mRNA sequence:	Length: 419 bp

>SGN-U204480 Capsicum annuum #1 (1 members)
CAACAAACAATTCTCTCTCTTCATATTCAACCATAGTAAAACAAACATGCAAGAAGAATATTTATGCCCCAGCTTTAACAGTTTTGGATA
TTTATCAGAAATAGCCGCTAAGCCTTGATGAATTTCAGCGGGGGAAGAACGATAGCTTTAACGGGGAGGACAATTTTAAATTTTTGTGGG
TCGTGGAAAAATCGGTCTCCCTCAACCGTGGAATTCATCTATGATGGTCAAACTAAATTTCAGCCAATTTTCCATGTTTTCAACCGTGAT
CTATTGCTAAACGATGAATTGGATTATAAGAAAGTGAACGACGAGGCATCGGAGAATGTGGATAGTTCAATTAGCATTCCGTTGGAGAAT
TTATTTATAGACACACGGAAATCGACGACTTCGTCAACGTCATCGGAAGCGGATGAATT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E493623
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38886 (124 Aa)

MQEEYLCPSFNSFGYLSEIAAKLDEFQRGKNDSFNGEDNFKFLWVVEKSVSLNRGIHHDGQTKFQPIFHVFNRDLLLNDELDYKKVNDEA
SENVDSSISIPLENLFIDTRKSTTSSTSSEADEX

SignalP predicts non-secretion with a score of 0.057

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158609 (102 Aa)

ALMNFSGGRTIALTGRTILNFCGSWKNRSPSTVEFIYDGQTKFQPIFHVFNRDLLLNDELDYKKVNDEASENVDSSISIPLENLFIDTRK
STTSSTSSEADE

SignalP predicts non-secretion with a score of 0.265

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	730		26
2	38750		1
5	76499		1
1.1	102025	Protein of unknown function DUF1645	24

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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