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Unigene SGN-U204695

Unigene Basic Information

Unigene ID:	SGN-U204695
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204695
mRNA sequence:	Length: 450 bp

>SGN-U204695 Capsicum annuum #1 (1 members)
AATATCTTCTGAAAGAAAAAAAAAAAAGAGAGCATTATACTGTCAATTTCTCTGAATTTTAGCAAAACTAGTAAGGAAAAGTCAGTTATC
ATTATTGTTCATGGCAGAATCAAGTTATGCGACGACTATGGCTAGTAATCCGATTGCTGTAATCGGATCCCAATATTGCGCGGCGAACCA
GGTTGATCTTGTTATATCTAGGAAGGTCAAGACACTTAGATATGGAGAATTTGTTGTTTCAGATATGAATGGCAACTTCATCTTCAAAGT
TAAAGGCATAGCTTTTGGATGGCATGATAAGAGAGTTATTCTTGATGCTGCAGACAAGCCCTTAATCACTCTCAAACAAAAGATACTGAG
TAATCATTCGAGATGGAATATATATAGAGGAGAAAACACAGATGACAAAGAGGCTTTATTTACTGTAAAGACGACATCCATATTTCAATG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E489536
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30679390\|ref\|NP_850751.1\|	110.5	4.4e-24	47	300 bp (66.7%)	2
Description:	unknown protein [Arabidopsis thaliana] >gi75181359\|sp\|Q9LZX1.1\|Y5175_ARATH RecName: Full=UPF070…
arabidopsis	blastx	At5g01750.1	110.5	3.3e-25	47	300 bp (66.7%)	2
Description:	At5g01750.1 68412.m00084 expressed protein
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P158829 (131 Aa)

ILAKLVRKSQLSLLFMAESSYATTMASNPIAVIGSQYCAANQVDLVISRKVKTLRYGEFVVSDMNGNFIFKVKGIAFGWHDKRVILDAAD
KPLITLKQKILSNHSRWNIYRGENTDDKEALFTVKTTSIFQ

SignalP predicts secretion with a score of 0.529

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39093 (108 Aa)

MASNPIAVIGSQYCAANQVDLVISRKVKTLRYGEFVVSDMNGNFIFKVKGIAFGWHDKRVILDAADKPLITLKQKILSNHSRWNIYRGEN
TDDKEALFTVKTHPYFNX

SignalP predicts non-secretion with a score of 0.124

IPR007612 Protein of unknown function DUF567

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	186	DUF567	77
2	22624	DUF567	23
5	57063	DUF567	17
1.1	101511	Protein of unknown function DUF567	95
2	119563	Protein of unknown function DUF567	14
5	129886	Protein of unknown function DUF567	14

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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