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Unigene SGN-U204814

Unigene Basic Information

Unigene ID:	SGN-U204814
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204814
mRNA sequence:	Length: 313 bp

>SGN-U204814 Capsicum annuum #1 (1 members)
GAACTAGTCTCGAGTTTTTTTTTTTTTTTTTCTTCTCAAATAACATAAAAATTAATTAATAACCCATAATACATTATAGGACAATACTAA
ATAATACAAACTCCACAAGAATATATATGTATATATTTCTGATTGATCTTATTTAGCCTCATCTCTTATCTTCAGAGTTGAGCTAAATGT
TGAATATCAAAGGGATAAGCATCTGATGACCTTCCAGCCCTGTATGATCTTCTCCCAACAATTGTATTTGCTGCTTCACCTGGATGAAAT
GCATCCCAAAATAGATATTCATCCCTATTTGGGCATGGATTTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
CaGLIP1	GDPL lipase 1	Lipase

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E509171
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7485419\|pir\|\|T05034	78.18	3e-14	66.67	144 bp (46.0%)	-3
Description:	gi\|7485419\|pir\|\|T05034 hypothetical protein F13C5.140 - Arabidopsis thaliana gi\|2832625\|emb\|CAA…
arabidopsis	blastx	At5g45670.1	78.18	7.7e-16	66.67	144 bp (46.0%)	-3
Description:	At5g45670.1 68412.m05060 GDSL-motif lipase/hydrolase protein similar to family II lipases EXL3 …
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39209 (49 Aa)

NPCPNRDEYLFWDAFHPGEAANTIVGRRSYRAGRSSDAYPFDIQHLAQL

SignalP predicts non-secretion with a score of 0.05

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158949 (59 Aa)

SYLASSLIFRVELNVEYQRDKHLMTFQPCMIFSQQLYLLLHLDEMHPKIDIHPYLGMDF

SignalP predicts non-secretion with a score of 0.112

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	33	Lipase_GDSL	287
2	21983	Lipase_GDSL	280
5	56275	Lipase_GDSL	174
1.1	101406	Lipolytic enzyme G-D-S-L - Biological Process: lipid metabolism (GO:0006629) - Molecular Function: hydrolase activity acting on ester bonds (GO:0016788)	261
2	118422	Lipolytic enzyme G-D-S-L - Biological Process: lipid metabolism (GO:0006629) - Molecular Function: hydrolase activity acting on ester bonds (GO:0016788)	248
5	128942	Lipolytic enzyme G-D-S-L - Biological Process: lipid metabolism (GO:0006629) - Molecular Function: hydrolase activity acting on ester bonds (GO:0016788)	163

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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